RNA–Protein interactions for RNA: ENST00000464541.5

PTCD3-205, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5

Gene PTCD3, Length 890 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-205ENST00000464541 KCNB1Q14721 858 aa6.9□□□□□ -1.3
PTCD3-205ENST00000464541 CCDC142Q17RM4 750 aa6.9□□□□□ -1.3
PTCD3-205ENST00000464541 TMEM196Q5HYL7 178 aa6.9□□□□□ -1.3
PTCD3-205ENST00000464541 KAZALD1Q96I82 304 aa6.9□□□□□ -1.3
PTCD3-205ENST00000464541 MPHOSPH6Q99547 160 aaKnown RBP6.9□□□□□ -1.3
PTCD3-205ENST00000464541 USP29Q9HBJ7 922 aa6.9□□□□□ -1.3
PTCD3-205ENST00000464541 VPS45Q9NRW7 570 aa6.9□□□□□ -1.3
PTCD3-205ENST00000464541 SLC52A1Q9NWF4 448 aa6.9□□□□□ -1.3
PTCD3-205ENST00000464541 OVOL3O00110 214 aa6.89□□□□□ -1.31
PTCD3-205ENST00000464541 CA12O43570 354 aa6.89□□□□□ -1.31
PTCD3-205ENST00000464541 TUBB4AP04350 444 aa6.89□□□□□ -1.31
PTCD3-205ENST00000464541 NPPBP16860 134 aa6.89□□□□□ -1.31
PTCD3-205ENST00000464541 ATF7P17544 494 aaPredicted RBP6.89□□□□□ -1.31
PTCD3-205ENST00000464541 DRD1P21728 446 aa6.89□□□□□ -1.31
PTCD3-205ENST00000464541 GSTM5P46439 218 aa6.89□□□□□ -1.31
PTCD3-205ENST00000464541 SEMA3BQ13214 749 aa6.89□□□□□ -1.31
PTCD3-205ENST00000464541 CSHL1Q14406 222 aa6.89□□□□□ -1.31
PTCD3-205ENST00000464541 TMEM119Q4V9L6 283 aa6.89□□□□□ -1.31
PTCD3-205ENST00000464541 ZNF782Q6ZMW2 699 aaPredicted RBP6.89□□□□□ -1.31
PTCD3-205ENST00000464541 ZNF813Q6ZN06 617 aa6.89□□□□□ -1.31
PTCD3-205ENST00000464541 GATAD2AQ86YP4 633 aa6.89□□□□□ -1.31
PTCD3-205ENST00000464541 C8orf58Q8NAV2 365 aa6.89□□□□□ -1.31
PTCD3-205ENST00000464541 ZNF527Q8NB42 609 aa6.89□□□□□ -1.31
PTCD3-205ENST00000464541 ZNF398Q8TD17 642 aa6.89□□□□□ -1.31
PTCD3-205ENST00000464541 C18orf8Q96DM3 657 aa6.89□□□□□ -1.31
PTCD3-205ENST00000464541 SEMA5BQ9P283 1151 aa6.89□□□□□ -1.31
PTCD3-205ENST00000464541 CDC23Q9UJX2 597 aa6.89□□□□□ -1.31
PTCD3-205ENST00000464541 MAGED2Q9UNF1 606 aaPredicted RBP6.89□□□□□ -1.31
PTCD3-205ENST00000464541 A0A087WV62 115 aa6.88□□□□□ -1.31
PTCD3-205ENST00000464541 GXYLT2A0PJZ3 443 aa6.88□□□□□ -1.31
PTCD3-205ENST00000464541 SKAP2O75563 359 aaPredicted RBP6.88□□□□□ -1.31
PTCD3-205ENST00000464541 YY1P25490 414 aa6.88□□□□□ -1.31
PTCD3-205ENST00000464541 DUSP1P28562 367 aa6.88□□□□□ -1.31
PTCD3-205ENST00000464541 MFSD13AQ14CX5 517 aa6.88□□□□□ -1.31
PTCD3-205ENST00000464541 COLEC12Q5KU26 742 aa6.88□□□□□ -1.31
PTCD3-205ENST00000464541 CCDC144NLQ6NUI1 221 aa6.88□□□□□ -1.31
PTCD3-205ENST00000464541 MYLK4Q86YV6 388 aaPredicted RBP6.88□□□□□ -1.31
PTCD3-205ENST00000464541 SRRM1Q8IYB3 904 aaKnown RBP6.88□□□□□ -1.31
PTCD3-205ENST00000464541 IPO4Q8TEX9 1081 aaKnown RBP6.88□□□□□ -1.31
PTCD3-205ENST00000464541 PMM1Q92871 262 aa6.88□□□□□ -1.31
PTCD3-205ENST00000464541 EIF3CQ99613 913 aaKnown RBP6.88□□□□□ -1.31
PTCD3-205ENST00000464541 PAAF1Q9BRP4 392 aa6.88□□□□□ -1.31
PTCD3-205ENST00000464541 SAP30LQ9HAJ7 183 aa6.88□□□□□ -1.31
PTCD3-205ENST00000464541 ADARB2Q9NS39 739 aaKnown RBP6.88□□□□□ -1.31
PTCD3-205ENST00000464541 NFU1Q9UMS0 254 aa6.88□□□□□ -1.31
PTCD3-205ENST00000464541 FRMD4BQ9Y2L6 1034 aa6.88□□□□□ -1.31
PTCD3-205ENST00000464541 PNMA6EA0A0J9YXQ4 647 aa6.87□□□□□ -1.31
PTCD3-205ENST00000464541 J3KTA2 159 aa6.87□□□□□ -1.31
PTCD3-205ENST00000464541 CLIC1O00299 241 aa6.87□□□□□ -1.31
PTCD3-205ENST00000464541 PCDH17O14917 1159 aa6.87□□□□□ -1.31
PTCD3-205ENST00000464541 CTIFO43310 598 aaKnown RBP6.87□□□□□ -1.31
PTCD3-205ENST00000464541 PRAMEF2O60811 474 aa6.87□□□□□ -1.31
PTCD3-205ENST00000464541 RNF8O76064 485 aa6.87□□□□□ -1.31
PTCD3-205ENST00000464541 CYP2A6P11509 494 aaPredicted RBP6.87□□□□□ -1.31
PTCD3-205ENST00000464541 GALNSP34059 522 aa6.87□□□□□ -1.31
PTCD3-205ENST00000464541 JAK3P52333 1124 aa6.87□□□□□ -1.31
PTCD3-205ENST00000464541 ALDH18A1P54886 795 aaKnown RBP6.87□□□□□ -1.31
PTCD3-205ENST00000464541 MRPS21P82921 87 aaKnown RBP6.87□□□□□ -1.31
PTCD3-205ENST00000464541 PTK2BQ14289 1009 aa6.87□□□□□ -1.31
PTCD3-205ENST00000464541 SPARCL1Q14515 664 aa6.87□□□□□ -1.31
PTCD3-205ENST00000464541 KRT72Q14CN4 511 aa6.87□□□□□ -1.31
PTCD3-205ENST00000464541 C1orf228Q6PIY5 440 aa6.87□□□□□ -1.31
PTCD3-205ENST00000464541 PIK3AP1Q6ZUJ8 805 aa6.87□□□□□ -1.31
PTCD3-205ENST00000464541 SKAP1Q86WV1 359 aa6.87□□□□□ -1.31
PTCD3-205ENST00000464541 OR52L2PQ8NGH6 319 aa6.87□□□□□ -1.31
PTCD3-205ENST00000464541 FAM71BQ8TC56 605 aa6.87□□□□□ -1.31
PTCD3-205ENST00000464541 PNISRQ8TF01 805 aaKnown RBP6.87□□□□□ -1.31
PTCD3-205ENST00000464541 WDR60Q8WVS4 1066 aa6.87□□□□□ -1.31
PTCD3-205ENST00000464541 RSC1A1Q92681 617 aa6.87□□□□□ -1.31
PTCD3-205ENST00000464541 ADGRE3Q9BY15 652 aa6.87□□□□□ -1.31
PTCD3-205ENST00000464541 IGSF9Q9P2J2 1179 aa6.87□□□□□ -1.31
PTCD3-205ENST00000464541 TAGLN3Q9UI15 199 aa6.87□□□□□ -1.31
PTCD3-205ENST00000464541 PIP5K1BO14986 540 aa6.86□□□□□ -1.31
PTCD3-205ENST00000464541 MBPP02686 304 aaPredicted RBP6.86□□□□□ -1.31
PTCD3-205ENST00000464541 ANXA6P08133 673 aa6.86□□□□□ -1.31
PTCD3-205ENST00000464541 ITGA5P08648 1049 aa6.86□□□□□ -1.31
PTCD3-205ENST00000464541 IGHMBP2P38935 993 aaKnown RBP6.86□□□□□ -1.31
PTCD3-205ENST00000464541 ICA1Q05084 483 aa6.86□□□□□ -1.31
PTCD3-205ENST00000464541 BFSP2Q13515 415 aa6.86□□□□□ -1.31
PTCD3-205ENST00000464541 NRSN1Q8IZ57 195 aa6.86□□□□□ -1.31
PTCD3-205ENST00000464541 GALNT16Q8N428 558 aa6.86□□□□□ -1.31
PTCD3-205ENST00000464541 GLMPQ8WWB7 406 aa6.86□□□□□ -1.31
PTCD3-205ENST00000464541 PRPF18Q99633 342 aaKnown RBP6.86□□□□□ -1.31
PTCD3-205ENST00000464541 TP63Q9H3D4 680 aaPredicted RBP6.86□□□□□ -1.31
PTCD3-205ENST00000464541 ABHD10Q9NUJ1 306 aa6.86□□□□□ -1.31
PTCD3-205ENST00000464541 UBE2J1Q9Y385 318 aaPredicted RBP6.86□□□□□ -1.31
PTCD3-205ENST00000464541 DAAM1Q9Y4D1 1078 aa6.86□□□□□ -1.31
PTCD3-205ENST00000464541 COMMD10Q9Y6G5 202 aa6.86□□□□□ -1.31
PTCD3-205ENST00000464541 FNDC1Q4ZHG4 1894 aaPredicted RBP6.85□□□□□ -1.31
PTCD3-205ENST00000464541 CGB1A6NKQ9 187 aa6.85□□□□□ -1.31
PTCD3-205ENST00000464541 TTC34A8MYJ7 566 aa6.85□□□□□ -1.31
PTCD3-205ENST00000464541 PPP6CO00743 305 aa6.85□□□□□ -1.31
PTCD3-205ENST00000464541 FYB1O15117 783 aa6.85□□□□□ -1.31
PTCD3-205ENST00000464541 NPC1O15118 1278 aa6.85□□□□□ -1.31
PTCD3-205ENST00000464541 CELA2AP08217 269 aa6.85□□□□□ -1.31
PTCD3-205ENST00000464541 POLE2P56282 527 aa6.85□□□□□ -1.31
PTCD3-205ENST00000464541 WDR5P61964 334 aaKnown RBP6.85□□□□□ -1.31
PTCD3-205ENST00000464541 RAE1P78406 368 aaKnown RBP6.85□□□□□ -1.31
PTCD3-205ENST00000464541 BIRC2Q13490 618 aa6.85□□□□□ -1.31
PTCD3-205ENST00000464541 CBFBQ13951 182 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms