RNA–Protein interactions for RNA: ENST00000456581.1

LINC00959-201, Transcript of HCG1648656, isoform CRA_a, humanhuman

TSL 2

Gene LINC00959, Length 2,843 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00959-201ENST00000456581 CCNG1P51959 295 aa12.89□□□□□ -0.35
LINC00959-201ENST00000456581 ARFIP2P53365 341 aa12.89□□□□□ -0.35
LINC00959-201ENST00000456581 SNX17Q15036 470 aa12.89□□□□□ -0.35
LINC00959-201ENST00000456581 C15orf59Q2T9L4 293 aaPredicted RBP12.89□□□□□ -0.35
LINC00959-201ENST00000456581 SLC45A4Q5BKX6 768 aa12.89□□□□□ -0.35
LINC00959-201ENST00000456581 SNX30Q5VWJ9 437 aa12.89□□□□□ -0.35
LINC00959-201ENST00000456581 PPP1R2P3Q6NXS1 205 aa12.89□□□□□ -0.35
LINC00959-201ENST00000456581 SLC27A1Q6PCB7 646 aa12.89□□□□□ -0.35
LINC00959-201ENST00000456581 TREML1Q86YW5 311 aa12.89□□□□□ -0.35
LINC00959-201ENST00000456581 CTAGE3PQ8IX95 158 aa12.89□□□□□ -0.35
LINC00959-201ENST00000456581 NETO2Q8NC67 525 aa12.89□□□□□ -0.35
LINC00959-201ENST00000456581 ARRDC4Q8NCT1 418 aa12.89□□□□□ -0.35
LINC00959-201ENST00000456581 DNAJC9Q8WXX5 260 aa12.89□□□□□ -0.35
LINC00959-201ENST00000456581 PTCD3Q96EY7 689 aaKnown RBP12.89□□□□□ -0.35
LINC00959-201ENST00000456581 B3GNT5Q9BYG0 378 aa12.89□□□□□ -0.35
LINC00959-201ENST00000456581 ZNF518BQ9C0D4 1074 aa12.89□□□□□ -0.35
LINC00959-201ENST00000456581 BATF3Q9NR55 127 aa12.89□□□□□ -0.35
LINC00959-201ENST00000456581 GPATCH2LQ9NWQ4 482 aa12.89□□□□□ -0.35
LINC00959-201ENST00000456581 C2CD2Q9Y426 696 aa12.89□□□□□ -0.35
LINC00959-201ENST00000456581 MBLAC1A4D2B0 266 aaPredicted RBP12.88□□□□□ -0.35
LINC00959-201ENST00000456581 CAPN9O14815 690 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 GYG2O15488 501 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 ZWINTO95229 277 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 MT-ND3P03897 115 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 SOX4Q06945 474 aaPredicted RBP12.88□□□□□ -0.35
LINC00959-201ENST00000456581 BIRC2Q13490 618 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 RCN2Q14257 317 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 CCDC6Q16204 474 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 FAM102AQ5T9C2 384 aaPredicted RBP12.88□□□□□ -0.35
LINC00959-201ENST00000456581 DRICH1Q6PGQ1 229 aaPredicted RBP12.88□□□□□ -0.35
LINC00959-201ENST00000456581 ZCCHC23Q6ZST2 131 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 KCTD6Q8NC69 237 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 SCG3Q8WXD2 468 aaKnown RBP12.88□□□□□ -0.35
LINC00959-201ENST00000456581 SNX27Q96L92 541 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 PEBP4Q96S96 227 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 MAGEB5Q9BZ81 275 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 LHX5Q9H2C1 402 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 PIH1D1Q9NWS0 290 aaKnown RBP12.88□□□□□ -0.35
LINC00959-201ENST00000456581 SLC17A6Q9P2U8 582 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 SLC24A2Q9UI40 661 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 ITGA11Q9UKX5 1188 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 DRG1Q9Y295 367 aaKnown RBP12.88□□□□□ -0.35
LINC00959-201ENST00000456581 RRN3P2A6NIE6 340 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 SPTLC1O15269 473 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 GSC2O15499 205 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 MED7O43513 233 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 PGK1P00558 417 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 F7P08709 466 aaPredicted RBP12.88□□□□□ -0.35
LINC00959-201ENST00000456581 UBTFL6P0CB48 400 aaPredicted RBP12.88□□□□□ -0.35
LINC00959-201ENST00000456581 TROVE2P10155 538 aaKnown RBP eCLIP12.88□□□□□ -0.35
LINC00959-201ENST00000456581 RBP3P10745 1247 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 ATP6V1C1P21283 382 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 KDELR1P24390 212 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 AFF1P51825 1210 aaKnown RBP12.88□□□□□ -0.35
LINC00959-201ENST00000456581 EIF3EP60228 445 aaKnown RBP12.88□□□□□ -0.35
LINC00959-201ENST00000456581 ADAM17P78536 824 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 CRHR2Q13324 411 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 PMF1Q6P1K2 205 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 C17orf99Q6UX52 265 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 SAPCD2Q86UD0 394 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 EFCAB3Q8N7B9 438 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 C7orf31Q8N865 590 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 TRPV1Q8NER1 839 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 SPATA18Q8TC71 538 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 ZNF333Q96JL9 665 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 C20orf27Q9GZN8 174 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 ARHGEF4Q9NR80 690 aa12.88□□□□□ -0.35
LINC00959-201ENST00000456581 TNPO2O14787 897 aaKnown RBP12.87□□□□□ -0.35
LINC00959-201ENST00000456581 GABBR2O75899 941 aa12.87□□□□□ -0.35
LINC00959-201ENST00000456581 ENO1P06733 434 aaKnown RBP12.87□□□□□ -0.35
LINC00959-201ENST00000456581 C6orf222P0C671 652 aaPredicted RBP12.87□□□□□ -0.35
LINC00959-201ENST00000456581 ZCCHC18P0CG32 403 aa12.87□□□□□ -0.35
LINC00959-201ENST00000456581 LMO2P25791 158 aa12.87□□□□□ -0.35
LINC00959-201ENST00000456581 ATICP31939 592 aa12.87□□□□□ -0.35
LINC00959-201ENST00000456581 MXRA7P84157 204 aa12.87□□□□□ -0.35
LINC00959-201ENST00000456581 SATB1Q01826 763 aa12.87□□□□□ -0.35
LINC00959-201ENST00000456581 GOLGA7BQ2TAP0 167 aa12.87□□□□□ -0.35
LINC00959-201ENST00000456581 OR6B2Q6IFH4 312 aa12.87□□□□□ -0.35
LINC00959-201ENST00000456581 TTC30AQ86WT1 665 aa12.87□□□□□ -0.35
LINC00959-201ENST00000456581 SCUBE3Q8IX30 993 aa12.87□□□□□ -0.35
LINC00959-201ENST00000456581 PPM1NQ8N819 430 aa12.87□□□□□ -0.35
LINC00959-201ENST00000456581 USP6NLQ92738 828 aa12.87□□□□□ -0.35
LINC00959-201ENST00000456581 FAM136AQ96C01 138 aa12.87□□□□□ -0.35
LINC00959-201ENST00000456581 NT5C1AQ9BXI3 368 aa12.87□□□□□ -0.35
LINC00959-201ENST00000456581 TRIM55Q9BYV6 548 aa12.87□□□□□ -0.35
LINC00959-201ENST00000456581 VRTNQ9H8Y1 702 aa12.87□□□□□ -0.35
LINC00959-201ENST00000456581 MEI4A8MW99 385 aa12.87□□□□□ -0.35
LINC00959-201ENST00000456581 H3BRJ5 948 aa12.87□□□□□ -0.35
LINC00959-201ENST00000456581 ATP5HO75947 161 aa12.87□□□□□ -0.35
LINC00959-201ENST00000456581 DLDP09622 509 aaKnown RBP12.87□□□□□ -0.35
LINC00959-201ENST00000456581 SP100P23497 879 aaPredicted RBP12.87□□□□□ -0.35
LINC00959-201ENST00000456581 MIPP30301 263 aa12.87□□□□□ -0.35
LINC00959-201ENST00000456581 KDSRQ06136 332 aa12.87□□□□□ -0.35
LINC00959-201ENST00000456581 TRIM32Q13049 653 aa12.87□□□□□ -0.35
LINC00959-201ENST00000456581 PIGHQ14442 188 aaPredicted RBP12.87□□□□□ -0.35
LINC00959-201ENST00000456581 NOTUMQ6P988 496 aa12.87□□□□□ -0.35
LINC00959-201ENST00000456581 FAM183BPQ6ZVS7 135 aa12.87□□□□□ -0.35
LINC00959-201ENST00000456581 IFNL1Q8IU54 200 aa12.87□□□□□ -0.35
LINC00959-201ENST00000456581 ENDOVQ8N8Q3 282 aaKnown RBP12.87□□□□□ -0.35
LINC00959-201ENST00000456581 OR6B3Q8NGW1 331 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms