RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 MGAT4DA6NG13 374 aa17.66■□□□□ 0.42
PTPRF-209ENST00000438120 STRNO43815 780 aa17.66■□□□□ 0.42
PTPRF-209ENST00000438120 THRAP10827 490 aa17.66■□□□□ 0.42
PTPRF-209ENST00000438120 AMPD1P23109 780 aa17.66■□□□□ 0.42
PTPRF-209ENST00000438120 ADORA2AP29274 412 aa17.66■□□□□ 0.42
PTPRF-209ENST00000438120 ATP6AP1LQ52LC2 224 aa17.66■□□□□ 0.42
PTPRF-209ENST00000438120 ZFPM1Q8IX07 1006 aa17.66■□□□□ 0.42
PTPRF-209ENST00000438120 MEGF6O75095 1541 aa17.66■□□□□ 0.42
PTPRF-209ENST00000438120 CCNT2O60583 730 aaKnown RBP17.66■□□□□ 0.42
PTPRF-209ENST00000438120 CPA3P15088 417 aa17.66■□□□□ 0.42
PTPRF-209ENST00000438120 CYP3A43Q9HB55 503 aa17.66■□□□□ 0.42
PTPRF-209ENST00000438120 MRGBPQ9NV56 204 aa17.66■□□□□ 0.42
PTPRF-209ENST00000438120 LACTBL1A8MY62 500 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 SYNCRIPO60506 623 aaKnown RBP17.65■□□□□ 0.42
PTPRF-209ENST00000438120 ATP6V1B2P21281 511 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 KBTBD12Q3ZCT8 623 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 REPS2Q8NFH8 660 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 ADGRE3Q9BY15 652 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 NFKBIZQ9BYH8 718 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 TMEM245Q9H330 911 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 EFCAB1Q9HAE3 211 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 SNCAIPQ9Y6H5 919 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 TISP43B9A030 160 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 GOLGA8TH3BQL2 631 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 CCDC130P13994 396 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 SERPINB3P29508 390 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 EMILIN2Q9BXX0 1053 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 RMND5AQ9H871 391 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 PADI4Q9UM07 663 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 CCR1P32246 355 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 CCNG2Q16589 344 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 MYCBPAPQ8TBZ2 947 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 PNMA5Q96PV4 448 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 SEMA4AQ9H3S1 761 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 C10orf88Q9H8K7 445 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 NMRK1Q9NWW6 199 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 ZSCAN5CA6NGD5 496 aaPredicted RBP17.65■□□□□ 0.42
PTPRF-209ENST00000438120 WNT10BO00744 389 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 OR1E1P30953 314 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 ALDH5A1P51649 535 aaPredicted RBP17.65■□□□□ 0.42
PTPRF-209ENST00000438120 MFSD10Q14728 455 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 MARC1Q5VT66 337 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 VN1R5Q7Z5H4 357 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 KRT78Q8N1N4 520 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 TSEN34Q9BSV6 310 aaKnown RBP17.65■□□□□ 0.42
PTPRF-209ENST00000438120 VHLP40337 213 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 PAPD7Q5XG87 772 aaKnown RBP17.65■□□□□ 0.42
PTPRF-209ENST00000438120 HNRNPLLQ8WVV9 542 aaKnown RBP17.65■□□□□ 0.42
PTPRF-209ENST00000438120 CCDC126Q96EE4 140 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 MTMR8Q96EF0 704 aa17.65■□□□□ 0.42
PTPRF-209ENST00000438120 DRG1Q9Y295 367 aaKnown RBP17.65■□□□□ 0.42
PTPRF-209ENST00000438120 CALCAP01258 141 aa17.64■□□□□ 0.42
PTPRF-209ENST00000438120 ABCB1P08183 1280 aaPredicted RBP17.64■□□□□ 0.42
PTPRF-209ENST00000438120 TCF3P15923 654 aa17.64■□□□□ 0.42
PTPRF-209ENST00000438120 TBX4P57082 545 aa17.64■□□□□ 0.42
PTPRF-209ENST00000438120 TGFB2P61812 414 aa17.64■□□□□ 0.42
PTPRF-209ENST00000438120 CDKAL1Q5VV42 579 aa17.64■□□□□ 0.42
PTPRF-209ENST00000438120 FUT8Q9BYC5 575 aa17.64■□□□□ 0.42
PTPRF-209ENST00000438120 PALMDQ9NP74 551 aa17.64■□□□□ 0.42
PTPRF-209ENST00000438120 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.64■□□□□ 0.42
PTPRF-209ENST00000438120 MLH1P40692 756 aa17.64■□□□□ 0.41
PTPRF-209ENST00000438120 TUBP50607 506 aa17.64■□□□□ 0.41
PTPRF-209ENST00000438120 OTOP1Q7RTM1 612 aa17.64■□□□□ 0.41
PTPRF-209ENST00000438120 TLK2Q86UE8 772 aa17.64■□□□□ 0.41
PTPRF-209ENST00000438120 TEX9Q8N6V9 391 aa17.64■□□□□ 0.41
PTPRF-209ENST00000438120 SLC2A14Q8TDB8 520 aa17.64■□□□□ 0.41
PTPRF-209ENST00000438120 ADCYAP1R1P41586 468 aa17.64■□□□□ 0.41
PTPRF-209ENST00000438120 BEX3Q00994 111 aa17.64■□□□□ 0.41
PTPRF-209ENST00000438120 CNPY4Q8N129 248 aa17.64■□□□□ 0.41
PTPRF-209ENST00000438120 MTFR1LQ9H019 292 aa17.64■□□□□ 0.41
PTPRF-209ENST00000438120 CDKN2AIPQ9NXV6 580 aaPredicted RBP17.64■□□□□ 0.41
PTPRF-209ENST00000438120 CAB39Q9Y376 341 aaPredicted RBP17.64■□□□□ 0.41
PTPRF-209ENST00000438120 LINC00854A0A1B0GVQ3 168 aa17.64■□□□□ 0.41
PTPRF-209ENST00000438120 GSTM1P09488 218 aa17.64■□□□□ 0.41
PTPRF-209ENST00000438120 ALDH9A1P49189 494 aa17.64■□□□□ 0.41
PTPRF-209ENST00000438120 NCKAP1LP55160 1127 aa17.64■□□□□ 0.41
PTPRF-209ENST00000438120 DSG1Q02413 1049 aa17.64■□□□□ 0.41
PTPRF-209ENST00000438120 BNC2Q6ZN30 1099 aaPredicted RBP17.64■□□□□ 0.41
PTPRF-209ENST00000438120 C16orf59Q7L2K0 433 aa17.64■□□□□ 0.41
PTPRF-209ENST00000438120 PCDHB5Q9Y5E4 795 aa17.64■□□□□ 0.41
PTPRF-209ENST00000438120 PCDHB12Q9Y5F1 795 aa17.64■□□□□ 0.41
PTPRF-209ENST00000438120 SNX8Q9Y5X2 465 aa17.64■□□□□ 0.41
PTPRF-209ENST00000438120 PIK3CDO00329 1044 aa17.64■□□□□ 0.41
PTPRF-209ENST00000438120 EML1O00423 815 aa17.64■□□□□ 0.41
PTPRF-209ENST00000438120 ELK3P41970 407 aa17.64■□□□□ 0.41
PTPRF-209ENST00000438120 MCL1Q07820 350 aa17.64■□□□□ 0.41
PTPRF-209ENST00000438120 MMRN1Q13201 1228 aa17.64■□□□□ 0.41
PTPRF-209ENST00000438120 PHKG1Q16816 387 aa17.64■□□□□ 0.41
PTPRF-209ENST00000438120 PDPK2PQ6A1A2 396 aa17.64■□□□□ 0.41
PTPRF-209ENST00000438120 CATSPER2Q96P56 530 aa17.64■□□□□ 0.41
PTPRF-209ENST00000438120 ELOVL6Q9H5J4 265 aa17.64■□□□□ 0.41
PTPRF-209ENST00000438120 STN1Q9H668 368 aaKnown RBP17.64■□□□□ 0.41
PTPRF-209ENST00000438120 ACTR8Q9H981 624 aa17.64■□□□□ 0.41
PTPRF-209ENST00000438120 PPRC1Q5VV67 1664 aaKnown RBP17.64■□□□□ 0.41
PTPRF-209ENST00000438120 AP5Z1O43299 807 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 MGAT1P26572 445 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 TRMT11Q7Z4G4 463 aaKnown RBP17.63■□□□□ 0.41
PTPRF-209ENST00000438120 SCUBE1Q8IWY4 988 aa17.63■□□□□ 0.41
PTPRF-209ENST00000438120 PDGFDQ9GZP0 370 aaPredicted RBP17.63■□□□□ 0.41
PTPRF-209ENST00000438120 SPACA6W5XKT8 324 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms