RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 WDR3Q9UNX4 943 aaKnown RBP eCLIP5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 DICER1Q9UPY3 1922 aaKnown RBP5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 HMX2A2RU54 273 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 HACD1B0YJ81 288 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 H3BRJ5 948 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 BANF1O75531 89 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 EDN1P05305 212 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 CPA3P15088 417 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 GPD1P21695 349 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 PRKAA2P54646 552 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 TMPRSS15P98073 1019 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 STX3Q13277 289 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 TNFAIP1Q13829 316 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 CAPSQ13938 189 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 BAATQ14032 418 aaPredicted RBP5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 HIC1Q14526 733 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 FAM187BQ17R55 369 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 DENND1BQ6P3S1 775 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 ZNF534Q76KX8 674 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 TTC7BQ86TV6 843 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 RFX6Q8HWS3 928 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 PSTKQ8IV42 348 aaKnown RBP5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 NUDCD3Q8IVD9 361 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 EFCAB3Q8N7B9 438 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 FAM71DQ8N9W8 422 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 JOSD2Q8TAC2 188 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 CXorf38Q8TB03 319 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 ZBTB10Q96DT7 871 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 CMTM5Q96DZ9 223 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 PRR11Q96HE9 360 aaPredicted RBP5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 CNDP1Q96KN2 507 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 MRM3Q9HC36 420 aaKnown RBP5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 UTP3Q9NQZ2 479 aaKnown RBP eCLIP5.94□□□□□ -1.464e-6■■■■■ 38.5
CCDC88A-203ENST00000412148 NRBP2Q9NSY0 501 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 MRGBPQ9NV56 204 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 ETNK2Q9NVF9 386 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 RCOR3Q9P2K3 495 aaPredicted RBP5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 MORF4L1Q9UBU8 362 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 ZC3H7BQ9UGR2 993 aaKnown RBP5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 CNOT11Q9UKZ1 510 aaKnown RBP5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 ZNF214Q9UL59 606 aaPredicted RBP5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 TMCO1Q9UM00 188 aa5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 APOBEC2Q9Y235 224 aaKnown RBP5.94□□□□□ -1.46
CCDC88A-203ENST00000412148 C19orf81C9J6K1 198 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 ZNF195O14628 629 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 CILPO75339 1184 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 TGFB3P10600 412 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 IL4RP24394 825 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 EDNRBP24530 442 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 GJC1P36383 396 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 GPD2P43304 727 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 RPL34P49207 117 aaKnown RBP5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 ZNF280AP59817 542 aaPredicted RBP5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 PSMC1P62191 440 aaKnown RBP5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 BASP1P80723 227 aaKnown RBP5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 ZNF699Q32M78 642 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 PABPC1LQ4VXU2 614 aaKnown RBP5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 SH2D4BQ5SQS7 431 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 ZBTB41Q5SVQ8 909 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 OGFRL1Q5TC84 451 aaPredicted RBP5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 CES4AQ5XG92 561 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 DPY19L2Q6NUT2 758 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 MPZL3Q6UWV2 235 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 IZUMO2Q6UXV1 221 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 PRPF39Q86UA1 669 aaKnown RBP5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 ALYREFQ86V81 257 aaKnown RBP5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 KBTBD6Q86V97 674 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 PLD5Q8N7P1 536 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 PHC3Q8NDX5 983 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 CATSPER1Q8NEC5 780 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 FBXO22Q8NEZ5 403 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 GIPC2Q8TF65 315 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 PPP1R14BQ96C90 147 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 ZBTB45Q96K62 511 aaPredicted RBP5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 CPXM1Q96SM3 734 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 SH2D3AQ9BRG2 576 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 FZD8Q9H461 694 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 CIDEBQ9UHD4 219 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 CYTH4Q9UIA0 394 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 WASF2Q9Y6W5 498 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 WDR91A4D1P6 747 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 TMEM114B3SHH9 223 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 GOLGA8SH3BPF8 625 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 GOLGA8MH3BSY2 632 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 HGSO14964 777 aaPredicted RBP5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 MAP3K13O43283 966 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 LGR5O75473 907 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 TNNC2P02585 160 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 SERPINE1P05121 402 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 FGF3P11487 239 aaPredicted RBP5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 GSTT1P30711 240 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 FDFT1P37268 417 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 PTPN9P43378 593 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 MTTPP55157 894 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 SOX10P56693 466 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 SNX16P57768 344 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 PTPN11Q06124 597 aaPredicted RBP5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 TRPC3Q13507 836 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 CHI3L2Q15782 390 aa5.93□□□□□ -1.46
CCDC88A-203ENST00000412148 DPYSL2Q16555 572 aa5.93□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms