RNA–Protein interactions for RNA: ENST00000392449.4

PTPRK-208, Transcript of protein tyrosine phosphatase, receptor type K, humanhuman

TSL 2

Gene PTPRK, Length 1,456 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRK-208ENST00000392449 TSPAN16Q9UKR8 245 aa17.41■□□□□ 0.38
PTPRK-208ENST00000392449 COQ4Q9Y3A0 265 aa17.41■□□□□ 0.38
PTPRK-208ENST00000392449 ACACBO00763 2458 aa17.41■□□□□ 0.38
PTPRK-208ENST00000392449 CHD8Q9HCK8 2581 aa17.4■□□□□ 0.38
PTPRK-208ENST00000392449 WASH3PC4AMC7 463 aa17.4■□□□□ 0.38
PTPRK-208ENST00000392449 SMC2O95347 1197 aa17.4■□□□□ 0.38
PTPRK-208ENST00000392449 PSEN1P49768 467 aa17.4■□□□□ 0.38
PTPRK-208ENST00000392449 YWHAGP61981 247 aaKnown RBP eCLIP17.4■□□□□ 0.38
PTPRK-208ENST00000392449 IRX4P78413 519 aa17.4■□□□□ 0.38
PTPRK-208ENST00000392449 PDE4CQ08493 712 aa17.4■□□□□ 0.38
PTPRK-208ENST00000392449 LPCAT2Q7L5N7 544 aa17.4■□□□□ 0.38
PTPRK-208ENST00000392449 C11orf74Q86VG3 221 aa17.4■□□□□ 0.38
PTPRK-208ENST00000392449 ANKRD52Q8NB46 1076 aa17.4■□□□□ 0.38
PTPRK-208ENST00000392449 UBA3Q8TBC4 463 aa17.4■□□□□ 0.38
PTPRK-208ENST00000392449 CD248Q9HCU0 757 aa17.4■□□□□ 0.38
PTPRK-208ENST00000392449 FSCN3Q9NQT6 498 aa17.4■□□□□ 0.38
PTPRK-208ENST00000392449 ARMCX3Q9UH62 379 aaPredicted RBP17.4■□□□□ 0.38
PTPRK-208ENST00000392449 MAN1B1Q9UKM7 699 aa17.4■□□□□ 0.38
PTPRK-208ENST00000392449 STARD13Q9Y3M8 1113 aa17.4■□□□□ 0.38
PTPRK-208ENST00000392449 KHNYNO15037 678 aaKnown RBP17.39■□□□□ 0.37
PTPRK-208ENST00000392449 CD19P15391 556 aa17.39■□□□□ 0.37
PTPRK-208ENST00000392449 NDUFV2P19404 249 aa17.39■□□□□ 0.37
PTPRK-208ENST00000392449 PREPLQ4J6C6 727 aaPredicted RBP17.39■□□□□ 0.37
PTPRK-208ENST00000392449 FYB2Q5VWT5 728 aa17.39■□□□□ 0.37
PTPRK-208ENST00000392449 RSRC2Q7L4I2 434 aaKnown RBP17.39■□□□□ 0.37
PTPRK-208ENST00000392449 TRMT11Q7Z4G4 463 aaKnown RBP17.39■□□□□ 0.37
PTPRK-208ENST00000392449 TADA2BQ86TJ2 420 aa17.39■□□□□ 0.37
PTPRK-208ENST00000392449 DENND1CQ8IV53 801 aa17.39■□□□□ 0.37
PTPRK-208ENST00000392449 KAT5Q92993 513 aa17.39■□□□□ 0.37
PTPRK-208ENST00000392449 FAXDC2Q96IV6 333 aa17.39■□□□□ 0.37
PTPRK-208ENST00000392449 LSM14BQ9BX40 385 aaKnown RBP17.39■□□□□ 0.37
PTPRK-208ENST00000392449 DNAI2Q9GZS0 605 aa17.39■□□□□ 0.37
PTPRK-208ENST00000392449 MARCH2Q9P0N8 246 aa17.39■□□□□ 0.37
PTPRK-208ENST00000392449 AGO1Q9UL18 857 aaKnown RBP17.39■□□□□ 0.37
PTPRK-208ENST00000392449 CLEC4EQ9ULY5 219 aa17.39■□□□□ 0.37
PTPRK-208ENST00000392449 EPG5Q9HCE0 2579 aa17.39■□□□□ 0.37
PTPRK-208ENST00000392449 SLC12A8A0AV02 714 aa17.38■□□□□ 0.37
PTPRK-208ENST00000392449 GIPC1O14908 333 aa17.38■□□□□ 0.37
PTPRK-208ENST00000392449 ZBED1O96006 694 aa17.38■□□□□ 0.37
PTPRK-208ENST00000392449 BMP6P22004 513 aa17.38■□□□□ 0.37
PTPRK-208ENST00000392449 ITPKAP23677 461 aa17.38■□□□□ 0.37
PTPRK-208ENST00000392449 LRRC63Q05C16 580 aa17.38■□□□□ 0.37
PTPRK-208ENST00000392449 ADIGQ0VDE8 80 aa17.38■□□□□ 0.37
PTPRK-208ENST00000392449 BECN1Q14457 450 aa17.38■□□□□ 0.37
PTPRK-208ENST00000392449 GEN1Q17RS7 908 aa17.38■□□□□ 0.37
PTPRK-208ENST00000392449 SGO2Q562F6 1265 aa17.38■□□□□ 0.37
PTPRK-208ENST00000392449 KLHL10Q6JEL2 608 aa17.38■□□□□ 0.37
PTPRK-208ENST00000392449 PSAPL1Q6NUJ1 521 aa17.38■□□□□ 0.37
PTPRK-208ENST00000392449 NUDT18Q6ZVK8 323 aa17.38■□□□□ 0.37
PTPRK-208ENST00000392449 ZNF276Q8N554 614 aa17.38■□□□□ 0.37
PTPRK-208ENST00000392449 TTC39CQ8N584 583 aa17.38■□□□□ 0.37
PTPRK-208ENST00000392449 UBR7Q8N806 425 aa17.38■□□□□ 0.37
PTPRK-208ENST00000392449 KCNV2Q8TDN2 545 aa17.38■□□□□ 0.37
PTPRK-208ENST00000392449 IPO4Q8TEX9 1081 aaKnown RBP17.38■□□□□ 0.37
PTPRK-208ENST00000392449 TFAP2BQ92481 460 aa17.38■□□□□ 0.37
PTPRK-208ENST00000392449 DDX1Q92499 740 aaKnown RBP17.38■□□□□ 0.37
PTPRK-208ENST00000392449 EDEM1Q92611 657 aa17.38■□□□□ 0.37
PTPRK-208ENST00000392449 ADAMTS9Q9P2N4 1935 aa17.38■□□□□ 0.37
PTPRK-208ENST00000392449 PIK3R2O00459 728 aa17.37■□□□□ 0.37
PTPRK-208ENST00000392449 CDX4O14627 284 aaPredicted RBP17.37■□□□□ 0.37
PTPRK-208ENST00000392449 KCNK5O95279 499 aa17.37■□□□□ 0.37
PTPRK-208ENST00000392449 PENKP01210 267 aaPredicted RBP17.37■□□□□ 0.37
PTPRK-208ENST00000392449 FMO5P49326 533 aa17.37■□□□□ 0.37
PTPRK-208ENST00000392449 BCAT1P54687 386 aa17.37■□□□□ 0.37
PTPRK-208ENST00000392449 NUCB2P80303 420 aa17.37■□□□□ 0.37
PTPRK-208ENST00000392449 COG7P83436 770 aa17.37■□□□□ 0.37
PTPRK-208ENST00000392449 TRIM61Q5EBN2 209 aa17.37■□□□□ 0.37
PTPRK-208ENST00000392449 GABRG3Q99928 467 aa17.37■□□□□ 0.37
PTPRK-208ENST00000392449 ZSWIM1Q9BR11 485 aa17.37■□□□□ 0.37
PTPRK-208ENST00000392449 UBXN6Q9BZV1 441 aa17.37■□□□□ 0.37
PTPRK-208ENST00000392449 FBXO10Q9UK96 956 aa17.37■□□□□ 0.37
PTPRK-208ENST00000392449 CYP8B1Q9UNU6 501 aa17.37■□□□□ 0.37
PTPRK-208ENST00000392449 MAP1BP46821 2468 aaKnown RBP17.37■□□□□ 0.37
PTPRK-208ENST00000392449 YJEFN3A6XGL0 299 aa17.37■□□□□ 0.37
PTPRK-208ENST00000392449 E7ENQ6 273 aa17.37■□□□□ 0.37
PTPRK-208ENST00000392449 O00370 1275 aa17.37■□□□□ 0.37
PTPRK-208ENST00000392449 BIN1O00499 593 aa17.37■□□□□ 0.37
PTPRK-208ENST00000392449 XPO1O14980 1071 aaKnown RBP17.37■□□□□ 0.37
PTPRK-208ENST00000392449 GABBR2O75899 941 aa17.37■□□□□ 0.37
PTPRK-208ENST00000392449 MFAP3P55082 362 aa17.37■□□□□ 0.37
PTPRK-208ENST00000392449 RPL6Q02878 288 aaKnown RBP17.37■□□□□ 0.37
PTPRK-208ENST00000392449 BST2Q10589 180 aaKnown RBP17.37■□□□□ 0.37
PTPRK-208ENST00000392449 LYSMD4Q5XG99 296 aa17.37■□□□□ 0.37
PTPRK-208ENST00000392449 PM20D1Q6GTS8 502 aa17.37■□□□□ 0.37
PTPRK-208ENST00000392449 TIGD1Q96MW7 591 aa17.37■□□□□ 0.37
PTPRK-208ENST00000392449 CDK5RAP1Q96SZ6 601 aaKnown RBP17.37■□□□□ 0.37
PTPRK-208ENST00000392449 SFMBT1Q9UHJ3 866 aa17.37■□□□□ 0.37
PTPRK-208ENST00000392449 PI4KAP42356 2102 aa17.36■□□□□ 0.37
PTPRK-208ENST00000392449 IGHV1OR15-9A0A0B4J2B8 117 aa17.36■□□□□ 0.37
PTPRK-208ENST00000392449 RNF225M0QZC1 329 aaPredicted RBP17.36■□□□□ 0.37
PTPRK-208ENST00000392449 PSMA7O14818 248 aa17.36■□□□□ 0.37
PTPRK-208ENST00000392449 MSI1O43347 362 aaKnown RBP17.36■□□□□ 0.37
PTPRK-208ENST00000392449 GADD45BO75293 160 aaPredicted RBP17.36■□□□□ 0.37
PTPRK-208ENST00000392449 LCP1P13796 627 aa17.36■□□□□ 0.37
PTPRK-208ENST00000392449 MAPK8P45983 427 aa17.36■□□□□ 0.37
PTPRK-208ENST00000392449 RGS7P49802 495 aa17.36■□□□□ 0.37
PTPRK-208ENST00000392449 SLC8A3P57103 927 aa17.36■□□□□ 0.37
PTPRK-208ENST00000392449 UAP1L1Q3KQV9 507 aa17.36■□□□□ 0.37
PTPRK-208ENST00000392449 CCDC40Q4G0X9 1142 aa17.36■□□□□ 0.37
PTPRK-208ENST00000392449 SDE2Q6IQ49 451 aa17.36■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms