RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 TPRG1Q6ZUI0 275 aa19.15■□□□□ 0.66
CLN3-259ENST00000637551 ASCL5Q7RTU5 278 aa19.15■□□□□ 0.66
CLN3-259ENST00000637551 LUZP1Q86V48 1076 aa19.15■□□□□ 0.66
CLN3-259ENST00000637551 SYNPOQ8N3V7 929 aa19.15■□□□□ 0.66
CLN3-259ENST00000637551 TMEM35BQ8NCS4 154 aa19.15■□□□□ 0.66
CLN3-259ENST00000637551 C1orf131Q8NDD1 294 aaKnown RBP19.15■□□□□ 0.66
CLN3-259ENST00000637551 DDX1Q92499 740 aaKnown RBP19.15■□□□□ 0.66
CLN3-259ENST00000637551 CLDN23Q96B33 292 aa19.15■□□□□ 0.66
CLN3-259ENST00000637551 PLD4Q96BZ4 506 aa19.15■□□□□ 0.66
CLN3-259ENST00000637551 TSPY26PQ9H489 355 aa19.15■□□□□ 0.66
CLN3-259ENST00000637551 LTB4R2Q9NPC1 389 aa19.15■□□□□ 0.66
CLN3-259ENST00000637551 HPS4Q9NQG7 708 aa19.15■□□□□ 0.66
CLN3-259ENST00000637551 HEBP1Q9NRV9 189 aa19.15■□□□□ 0.66
CLN3-259ENST00000637551 VPS13AQ96RL7 3174 aa19.14■□□□□ 0.66
CLN3-259ENST00000637551 H0Y858 1186 aa19.14■□□□□ 0.65
CLN3-259ENST00000637551 LTFP02788 710 aa19.14■□□□□ 0.65
CLN3-259ENST00000637551 MTA1Q13330 715 aa19.14■□□□□ 0.65
CLN3-259ENST00000637551 BSPRYQ5W0U4 402 aa19.14■□□□□ 0.65
CLN3-259ENST00000637551 DENND1BQ6P3S1 775 aa19.14■□□□□ 0.65
CLN3-259ENST00000637551 CCDC26Q8TAB7 109 aa19.14■□□□□ 0.65
CLN3-259ENST00000637551 RIN3Q8TB24 985 aa19.14■□□□□ 0.65
CLN3-259ENST00000637551 IPO4Q8TEX9 1081 aaKnown RBP19.14■□□□□ 0.65
CLN3-259ENST00000637551 PCMTD1Q96MG8 357 aaPredicted RBP19.14■□□□□ 0.65
CLN3-259ENST00000637551 NUP58Q9BVL2 599 aa19.14■□□□□ 0.65
CLN3-259ENST00000637551 NUCKS1Q9H1E3 243 aaKnown RBP19.14■□□□□ 0.65
CLN3-259ENST00000637551 ECT2Q9H8V3 914 aa19.14■□□□□ 0.65
CLN3-259ENST00000637551 CFAP97Q9P2B7 532 aa19.14■□□□□ 0.65
CLN3-259ENST00000637551 SH3BP1Q9Y3L3 701 aa19.14■□□□□ 0.65
CLN3-259ENST00000637551 SIT1Q9Y3P8 196 aa19.14■□□□□ 0.65
CLN3-259ENST00000637551 COL4A3Q01955 1670 aa19.14■□□□□ 0.65
CLN3-259ENST00000637551 YJEFN3A6XGL0 299 aa19.13■□□□□ 0.65
CLN3-259ENST00000637551 E7ENQ6 273 aa19.13■□□□□ 0.65
CLN3-259ENST00000637551 SPECC1L-ADORA2AF8WAN1 911 aa19.13■□□□□ 0.65
CLN3-259ENST00000637551 ADH1CP00326 375 aa19.13■□□□□ 0.65
CLN3-259ENST00000637551 GABRB2P47870 512 aa19.13■□□□□ 0.65
CLN3-259ENST00000637551 PGFP49763 221 aa19.13■□□□□ 0.65
CLN3-259ENST00000637551 CDR2Q01850 454 aa19.13■□□□□ 0.65
CLN3-259ENST00000637551 RING1Q06587 406 aa19.13■□□□□ 0.65
CLN3-259ENST00000637551 PREPLQ4J6C6 727 aaPredicted RBP19.13■□□□□ 0.65
CLN3-259ENST00000637551 TOGARAM2Q6ZUX3 1019 aa19.13■□□□□ 0.65
CLN3-259ENST00000637551 RSRC2Q7L4I2 434 aaKnown RBP19.13■□□□□ 0.65
CLN3-259ENST00000637551 ARCQ7LC44 396 aa19.13■□□□□ 0.65
CLN3-259ENST00000637551 CACNA2D4Q7Z3S7 1137 aa19.13■□□□□ 0.65
CLN3-259ENST00000637551 ZNF687Q8N1G0 1237 aa19.13■□□□□ 0.65
CLN3-259ENST00000637551 ZNF397Q8NF99 534 aaPredicted RBP19.13■□□□□ 0.65
CLN3-259ENST00000637551 RNF139Q8WU17 664 aa19.13■□□□□ 0.65
CLN3-259ENST00000637551 PPP1R13BQ96KQ4 1090 aa19.13■□□□□ 0.65
CLN3-259ENST00000637551 ST7Q9NRC1 585 aa19.13■□□□□ 0.65
CLN3-259ENST00000637551 MARCH2Q9P0N8 246 aa19.13■□□□□ 0.65
CLN3-259ENST00000637551 NOCTQ9UK39 431 aaKnown RBP19.13■□□□□ 0.65
CLN3-259ENST00000637551 SHISA7A6NL88 538 aa19.12■□□□□ 0.65
CLN3-259ENST00000637551 TRDMT1O14717 391 aaKnown RBP19.12■□□□□ 0.65
CLN3-259ENST00000637551 EPHB6O15197 1021 aa19.12■□□□□ 0.65
CLN3-259ENST00000637551 GREM1O60565 184 aa19.12■□□□□ 0.65
CLN3-259ENST00000637551 GABBR2O75899 941 aa19.12■□□□□ 0.65
CLN3-259ENST00000637551 FERP16591 822 aa19.12■□□□□ 0.65
CLN3-259ENST00000637551 FANCCQ00597 558 aa19.12■□□□□ 0.65
CLN3-259ENST00000637551 LRRC32Q14392 662 aa19.12■□□□□ 0.65
CLN3-259ENST00000637551 EFHC1Q5JVL4 640 aa19.12■□□□□ 0.65
CLN3-259ENST00000637551 DGKKQ5KSL6 1271 aa19.12■□□□□ 0.65
CLN3-259ENST00000637551 Q6ZNB5 142 aa19.12■□□□□ 0.65
CLN3-259ENST00000637551 CCDC105Q8IYK2 499 aa19.12■□□□□ 0.65
CLN3-259ENST00000637551 ADGRG2Q8IZP9 1017 aa19.12■□□□□ 0.65
CLN3-259ENST00000637551 FAM3CQ92520 227 aa19.12■□□□□ 0.65
CLN3-259ENST00000637551 ACP6Q9NPH0 428 aa19.12■□□□□ 0.65
CLN3-259ENST00000637551 SMPD4Q9NXE4 827 aa19.12■□□□□ 0.65
CLN3-259ENST00000637551 RRN3Q9NYV6 651 aa19.12■□□□□ 0.65
CLN3-259ENST00000637551 GTSE1Q9NYZ3 720 aa19.12■□□□□ 0.65
CLN3-259ENST00000637551 A0A1W2PQJ5 194 aa19.11■□□□□ 0.65
CLN3-259ENST00000637551 PRR23AA6NEV1 266 aa19.11■□□□□ 0.65
CLN3-259ENST00000637551 E5RJQ4 531 aa19.11■□□□□ 0.65
CLN3-259ENST00000637551 HOXC11O43248 304 aaPredicted RBP19.11■□□□□ 0.65
CLN3-259ENST00000637551 PAPSS1O43252 624 aaPredicted RBP19.11■□□□□ 0.65
CLN3-259ENST00000637551 HSF2BPO75031 334 aa19.11■□□□□ 0.65
CLN3-259ENST00000637551 PDGFBP01127 241 aaPredicted RBP19.11■□□□□ 0.65
CLN3-259ENST00000637551 LCP1P13796 627 aa19.11■□□□□ 0.65
CLN3-259ENST00000637551 CHKAP35790 457 aa19.11■□□□□ 0.65
CLN3-259ENST00000637551 PBX1P40424 430 aa19.11■□□□□ 0.65
CLN3-259ENST00000637551 RGS7P49802 495 aa19.11■□□□□ 0.65
CLN3-259ENST00000637551 KLK7P49862 253 aa19.11■□□□□ 0.65
CLN3-259ENST00000637551 UBASH3AP57075 661 aa19.11■□□□□ 0.65
CLN3-259ENST00000637551 TRIP4Q15650 581 aaPredicted RBP19.11■□□□□ 0.65
CLN3-259ENST00000637551 FBXO43Q4G163 708 aa19.11■□□□□ 0.65
CLN3-259ENST00000637551 SLC26A9Q7LBE3 791 aa19.11■□□□□ 0.65
CLN3-259ENST00000637551 WDTC1Q8N5D0 677 aa19.11■□□□□ 0.65
CLN3-259ENST00000637551 FLCNQ8NFG4 579 aa19.11■□□□□ 0.65
CLN3-259ENST00000637551 ST13P5Q8NFI4 369 aaPredicted RBP19.11■□□□□ 0.65
CLN3-259ENST00000637551 AZIN2Q96A70 460 aa19.11■□□□□ 0.65
CLN3-259ENST00000637551 ZFYVE19Q96K21 471 aa19.11■□□□□ 0.65
CLN3-259ENST00000637551 SERPINB11Q96P15 392 aa19.11■□□□□ 0.65
CLN3-259ENST00000637551 TTYH3Q9C0H2 523 aa19.11■□□□□ 0.65
CLN3-259ENST00000637551 EBF3Q9H4W6 596 aa19.11■□□□□ 0.65
CLN3-259ENST00000637551 POPDC2Q9HBU9 364 aa19.11■□□□□ 0.65
CLN3-259ENST00000637551 NLRC4Q9NPP4 1024 aa19.11■□□□□ 0.65
CLN3-259ENST00000637551 MARK1Q9P0L2 795 aa19.11■□□□□ 0.65
CLN3-259ENST00000637551 DLGAP2Q9P1A6 1054 aa19.11■□□□□ 0.65
CLN3-259ENST00000637551 CYTH4Q9UIA0 394 aa19.11■□□□□ 0.65
CLN3-259ENST00000637551 STOML2Q9UJZ1 356 aa19.11■□□□□ 0.65
CLN3-259ENST00000637551 KIAA1549LQ6ZVL6 1849 aa19.11■□□□□ 0.65
CLN3-259ENST00000637551 ITIH6Q6UXX5 1313 aa19.1■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms