RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 LPAL2Q16609 132 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 MIIPQ5JXC2 388 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 TRIM65Q6PJ69 517 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 MIB1Q86YT6 1006 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 SCML4Q8N228 414 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 NAT16Q8N8M0 369 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 CLEC4CQ8WTT0 213 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 RUBCNQ92622 972 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 PNKPQ96T60 521 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 NACA2Q9H009 215 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 NUP62CLQ9H1M0 184 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 PARD6AQ9NPB6 346 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 ZDHHC4Q9NPG8 344 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 CYTH4Q9UIA0 394 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 RASAL2Q9UJF2 1139 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 KIAA1257Q9ULG3 409 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 PLXND1Q9Y4D7 1925 aa12.75□□□□□ -0.37
LIG1-217ENST00000599165 CCDC163A0A0D9SF12 145 aa12.74□□□□□ -0.37
LIG1-217ENST00000599165 PIK3R2O00459 728 aa12.74□□□□□ -0.37
LIG1-217ENST00000599165 CACNG3O60359 315 aa12.74□□□□□ -0.37
LIG1-217ENST00000599165 ADAM23O75077 832 aa12.74□□□□□ -0.37
LIG1-217ENST00000599165 ATG13O75143 517 aa12.74□□□□□ -0.37
LIG1-217ENST00000599165 RGS7P49802 495 aa12.74□□□□□ -0.37
LIG1-217ENST00000599165 DAOAP59103 153 aa12.74□□□□□ -0.37
LIG1-217ENST00000599165 EFEMP1Q12805 493 aa12.74□□□□□ -0.37
LIG1-217ENST00000599165 C2orf27AQ580R0 203 aa12.74□□□□□ -0.37
LIG1-217ENST00000599165 TMEM92Q6UXU6 159 aa12.74□□□□□ -0.37
LIG1-217ENST00000599165 RBM43Q6ZSC3 357 aaKnown RBP12.74□□□□□ -0.37
LIG1-217ENST00000599165 IL17RCQ8NAC3 791 aa12.74□□□□□ -0.37
LIG1-217ENST00000599165 DNAI2Q9GZS0 605 aa12.74□□□□□ -0.37
LIG1-217ENST00000599165 UBE2TQ9NPD8 197 aaPredicted RBP12.74□□□□□ -0.37
LIG1-217ENST00000599165 ARHGEF4Q9NR80 690 aa12.74□□□□□ -0.37
LIG1-217ENST00000599165 HESX1Q9UBX0 185 aa12.74□□□□□ -0.37
LIG1-217ENST00000599165 NUP205Q92621 2012 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 M0QYV0 167 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 SGK1O00141 431 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 GFRA2O00451 464 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 FGFR1OPO95684 399 aaKnown RBP12.73□□□□□ -0.37
LIG1-217ENST00000599165 FYNP06241 537 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 CISD3P0C7P0 127 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 RALAP11233 206 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 PON1P27169 355 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 GRIA2P42262 883 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 GPD2P43304 727 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 CETN1Q12798 172 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 TRIP4Q15650 581 aaPredicted RBP12.73□□□□□ -0.37
LIG1-217ENST00000599165 BSPRYQ5W0U4 402 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 DENND1BQ6P3S1 775 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 TPGS1Q6ZTW0 290 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 TOGARAM2Q6ZUX3 1019 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 RASSF3Q86WH2 238 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 FAM217AQ8IXS0 508 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 CCDC33Q8N5R6 958 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 CAMKK1Q8N5S9 505 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 ALLCQ8N6M5 410 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 TERB1Q8NA31 727 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 EDEM1Q92611 657 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 THAP9Q9H5L6 903 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 LRRC4Q9HBW1 653 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 CD248Q9HCU0 757 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 CNGB3Q9NQW8 809 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 SAMSN1Q9NSI8 373 aaKnown RBP12.73□□□□□ -0.37
LIG1-217ENST00000599165 MARCH2Q9P0N8 246 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 FBXO10Q9UK96 956 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 AGO1Q9UL18 857 aaKnown RBP12.73□□□□□ -0.37
LIG1-217ENST00000599165 CLEC4EQ9ULY5 219 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 MMP17Q9ULZ9 603 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 SLC8A2Q9UPR5 921 aa12.73□□□□□ -0.37
LIG1-217ENST00000599165 TNRC6BQ9UPQ9 1833 aaKnown RBP12.73□□□□□ -0.37
LIG1-217ENST00000599165 MUC22E2RYF6 1773 aaPredicted RBP12.72□□□□□ -0.37
LIG1-217ENST00000599165 GTPBP10A4D1E9 387 aaKnown RBP12.72□□□□□ -0.37
LIG1-217ENST00000599165 PRRT4C9JH25 899 aa12.72□□□□□ -0.37
LIG1-217ENST00000599165 NEDD8-MDP1E9PL57 170 aa12.72□□□□□ -0.37
LIG1-217ENST00000599165 PENKP01210 267 aaPredicted RBP12.72□□□□□ -0.37
LIG1-217ENST00000599165 APODP05090 189 aa12.72□□□□□ -0.37
LIG1-217ENST00000599165 HMBSP08397 361 aa12.72□□□□□ -0.37
LIG1-217ENST00000599165 LCP1P13796 627 aa12.72□□□□□ -0.37
LIG1-217ENST00000599165 TYRP14679 529 aa12.72□□□□□ -0.37
LIG1-217ENST00000599165 ERCC5P28715 1186 aaPredicted RBP12.72□□□□□ -0.37
LIG1-217ENST00000599165 CORO1AP31146 461 aaKnown RBP12.72□□□□□ -0.37
LIG1-217ENST00000599165 CNR2P34972 360 aa12.72□□□□□ -0.37
LIG1-217ENST00000599165 MRPS21P82921 87 aaKnown RBP12.72□□□□□ -0.37
LIG1-217ENST00000599165 KCNMA1Q12791 1236 aa12.72□□□□□ -0.37
LIG1-217ENST00000599165 SIM2Q14190 667 aaPredicted RBP12.72□□□□□ -0.37
LIG1-217ENST00000599165 CRY1Q16526 586 aa12.72□□□□□ -0.37
LIG1-217ENST00000599165 ANO4Q32M45 955 aa12.72□□□□□ -0.37
LIG1-217ENST00000599165 HSP90AA4PQ58FG1 418 aa12.72□□□□□ -0.37
LIG1-217ENST00000599165 FYB2Q5VWT5 728 aa12.72□□□□□ -0.37
LIG1-217ENST00000599165 MSANTD2Q6P1R3 559 aa12.72□□□□□ -0.37
LIG1-217ENST00000599165 KIAA2013Q8IYS2 634 aa12.72□□□□□ -0.37
LIG1-217ENST00000599165 ARHGAP18Q8N392 663 aa12.72□□□□□ -0.37
LIG1-217ENST00000599165 FAM160A2Q8N612 972 aaPredicted RBP12.72□□□□□ -0.37
LIG1-217ENST00000599165 TXNDC5Q8NBS9 432 aaKnown RBP12.72□□□□□ -0.37
LIG1-217ENST00000599165 GAB3Q8WWW8 586 aa12.72□□□□□ -0.37
LIG1-217ENST00000599165 SHC3Q92529 594 aa12.72□□□□□ -0.37
LIG1-217ENST00000599165 EXOC4Q96A65 974 aa12.72□□□□□ -0.37
LIG1-217ENST00000599165 ACDQ96AP0 544 aa12.72□□□□□ -0.37
LIG1-217ENST00000599165 BBS2Q9BXC9 721 aa12.72□□□□□ -0.37
LIG1-217ENST00000599165 PLK2Q9NYY3 685 aa12.72□□□□□ -0.37
LIG1-217ENST00000599165 APEX2Q9UBZ4 518 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms