RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 MICAL1Q8TDZ2 1067 aa23.22■■□□□ 1.31
ATG4D-209ENST00000588857 YIPF1Q9Y548 306 aa23.22■■□□□ 1.31
ATG4D-209ENST00000588857 A0A1W2PQH9 124 aa23.21■■□□□ 1.31
ATG4D-209ENST00000588857 FAM92AA1XBS5 289 aa23.21■■□□□ 1.31
ATG4D-209ENST00000588857 EFCAB8A8MWE9 144 aa23.21■■□□□ 1.31
ATG4D-209ENST00000588857 RDXP35241 583 aaKnown RBP23.21■■□□□ 1.31
ATG4D-209ENST00000588857 DEUP1Q05D60 604 aa23.21■■□□□ 1.31
ATG4D-209ENST00000588857 NME3Q13232 169 aa23.21■■□□□ 1.31
ATG4D-209ENST00000588857 MTMR3Q13615 1198 aa23.21■■□□□ 1.31
ATG4D-209ENST00000588857 PLPP4Q5VZY2 271 aa23.21■■□□□ 1.31
ATG4D-209ENST00000588857 SCD5Q86SK9 330 aa23.21■■□□□ 1.31
ATG4D-209ENST00000588857 MRPL43Q8N983 215 aaKnown RBP23.21■■□□□ 1.31
ATG4D-209ENST00000588857 SPATA4Q8NEY3 305 aa23.21■■□□□ 1.31
ATG4D-209ENST00000588857 HSPH1Q92598 858 aa23.21■■□□□ 1.31
ATG4D-209ENST00000588857 RNF25Q96BH1 459 aaPredicted RBP23.21■■□□□ 1.31
ATG4D-209ENST00000588857 ACSF2Q96CM8 615 aaPredicted RBP23.21■■□□□ 1.31
ATG4D-209ENST00000588857 KLHL5Q96PQ7 755 aa23.21■■□□□ 1.31
ATG4D-209ENST00000588857 PEBP4Q96S96 227 aa23.21■■□□□ 1.31
ATG4D-209ENST00000588857 ADAM33Q9BZ11 813 aa23.21■■□□□ 1.31
ATG4D-209ENST00000588857 PRDM12Q9H4Q4 367 aa23.21■■□□□ 1.31
ATG4D-209ENST00000588857 FAM204AQ9H8W3 233 aa23.21■■□□□ 1.31
ATG4D-209ENST00000588857 SYNJ2BP-COX16A0A087WUM0 186 aa23.2■■□□□ 1.3
ATG4D-209ENST00000588857 LRRD1A4D1F6 860 aa23.2■■□□□ 1.3
ATG4D-209ENST00000588857 ENDOD1O94919 500 aa23.2■■□□□ 1.3
ATG4D-209ENST00000588857 CSPG5O95196 566 aa23.2■■□□□ 1.3
ATG4D-209ENST00000588857 F9P00740 461 aa23.2■■□□□ 1.3
ATG4D-209ENST00000588857 RARAP10276 462 aa23.2■■□□□ 1.3
ATG4D-209ENST00000588857 DNAJB1P25685 340 aa23.2■■□□□ 1.3
ATG4D-209ENST00000588857 KLRC2P26717 231 aa23.2■■□□□ 1.3
ATG4D-209ENST00000588857 ITIH3Q06033 890 aa23.2■■□□□ 1.3
ATG4D-209ENST00000588857 VEPH1Q14D04 833 aa23.2■■□□□ 1.3
ATG4D-209ENST00000588857 TAF12Q16514 161 aa23.2■■□□□ 1.3
ATG4D-209ENST00000588857 SPRED2Q7Z698 418 aa23.2■■□□□ 1.3
ATG4D-209ENST00000588857 KCTD6Q8NC69 237 aa23.2■■□□□ 1.3
ATG4D-209ENST00000588857 SLITRK1Q96PX8 696 aa23.2■■□□□ 1.3
ATG4D-209ENST00000588857 NMUR1Q9HB89 426 aa23.2■■□□□ 1.3
ATG4D-209ENST00000588857 TLR8Q9NR97 1041 aaKnown RBP23.2■■□□□ 1.3
ATG4D-209ENST00000588857 COX16Q9P0S2 106 aa23.2■■□□□ 1.3
ATG4D-209ENST00000588857 GMIPQ9P107 970 aa23.2■■□□□ 1.3
ATG4D-209ENST00000588857 MAGED2Q9UNF1 606 aaPredicted RBP23.2■■□□□ 1.3
ATG4D-209ENST00000588857 COL4A4P53420 1690 aaPredicted RBP23.2■■□□□ 1.3
ATG4D-209ENST00000588857 MTCL1Q9Y4B5 1905 aaKnown RBP23.2■■□□□ 1.3
ATG4D-209ENST00000588857 COL6A3P12111 3177 aa23.19■■□□□ 1.3
ATG4D-209ENST00000588857 C2orf71A6NGG8 1288 aa23.19■■□□□ 1.3
ATG4D-209ENST00000588857 PI4K2BG5E9Z4 385 aa23.19■■□□□ 1.3
ATG4D-209ENST00000588857 KRIT1O00522 736 aa23.19■■□□□ 1.3
ATG4D-209ENST00000588857 TADA3O75528 432 aa23.19■■□□□ 1.3
ATG4D-209ENST00000588857 PSEN1P49768 467 aa23.19■■□□□ 1.3
ATG4D-209ENST00000588857 COPS2P61201 443 aa23.19■■□□□ 1.3
ATG4D-209ENST00000588857 ERVK-21P61565 698 aa23.19■■□□□ 1.3
ATG4D-209ENST00000588857 TUBB4BP68371 445 aa23.19■■□□□ 1.3
ATG4D-209ENST00000588857 PITX1P78337 314 aaPredicted RBP23.19■■□□□ 1.3
ATG4D-209ENST00000588857 TAF10Q12962 218 aa23.19■■□□□ 1.3
ATG4D-209ENST00000588857 SND1Q7KZF4 910 aaKnown RBP eCLIP23.19■■□□□ 1.3
ATG4D-209ENST00000588857 RSRC2Q7L4I2 434 aaKnown RBP23.19■■□□□ 1.3
ATG4D-209ENST00000588857 BNIPLQ7Z465 357 aa23.19■■□□□ 1.3
ATG4D-209ENST00000588857 SLC13A5Q86YT5 568 aaPredicted RBP23.19■■□□□ 1.3
ATG4D-209ENST00000588857 ADAM32Q8TC27 787 aa23.19■■□□□ 1.3
ATG4D-209ENST00000588857 RNF139Q8WU17 664 aa23.19■■□□□ 1.3
ATG4D-209ENST00000588857 TEKT4Q8WW24 435 aa23.19■■□□□ 1.3
ATG4D-209ENST00000588857 INSL5Q9Y5Q6 135 aa23.19■■□□□ 1.3
ATG4D-209ENST00000588857 TGM5O43548 720 aa23.18■■□□□ 1.3
ATG4D-209ENST00000588857 SPATA31D3P0C874 917 aa23.18■■□□□ 1.3
ATG4D-209ENST00000588857 CSH1P0DML2 217 aa23.18■■□□□ 1.3
ATG4D-209ENST00000588857 CSH2P0DML3 217 aa23.18■■□□□ 1.3
ATG4D-209ENST00000588857 FOSL2P15408 326 aa23.18■■□□□ 1.3
ATG4D-209ENST00000588857 GBP1P32455 592 aa23.18■■□□□ 1.3
ATG4D-209ENST00000588857 ATXN1P54253 815 aaKnown RBP23.18■■□□□ 1.3
ATG4D-209ENST00000588857 TERF1P54274 439 aa23.18■■□□□ 1.3
ATG4D-209ENST00000588857 EPHB3P54753 998 aa23.18■■□□□ 1.3
ATG4D-209ENST00000588857 C2orf54Q08AI8 447 aa23.18■■□□□ 1.3
ATG4D-209ENST00000588857 OTUD1Q5VV17 481 aaPredicted RBP23.18■■□□□ 1.3
ATG4D-209ENST00000588857 SPATA31D4Q6ZUB0 917 aa23.18■■□□□ 1.3
ATG4D-209ENST00000588857 CMASQ8NFW8 434 aaPredicted RBP23.18■■□□□ 1.3
ATG4D-209ENST00000588857 RAPGEF5Q92565 580 aa23.18■■□□□ 1.3
ATG4D-209ENST00000588857 PGAP3Q96FM1 320 aaPredicted RBP23.18■■□□□ 1.3
ATG4D-209ENST00000588857 TTLL2Q9BWV7 592 aa23.18■■□□□ 1.3
ATG4D-209ENST00000588857 AP1M1Q9BXS5 423 aa23.18■■□□□ 1.3
ATG4D-209ENST00000588857 STAU2Q9NUL3 570 aaKnown RBP eCLIP23.18■■□□□ 1.3
ATG4D-209ENST00000588857 DDIT4Q9NX09 232 aa23.18■■□□□ 1.3
ATG4D-209ENST00000588857 CALCOCO1Q9P1Z2 691 aa23.18■■□□□ 1.3
ATG4D-209ENST00000588857 CHD9Q3L8U1 2897 aa23.18■■□□□ 1.3
ATG4D-209ENST00000588857 GOLGA6L10A0A0M3HER8 536 aa23.18■■□□□ 1.3
ATG4D-209ENST00000588857 HIDE1A8MVS5 230 aa23.18■■□□□ 1.3
ATG4D-209ENST00000588857 GRM6O15303 877 aa23.18■■□□□ 1.3
ATG4D-209ENST00000588857 PGFP49763 221 aa23.18■■□□□ 1.3
ATG4D-209ENST00000588857 TWF1Q12792 350 aa23.18■■□□□ 1.3
ATG4D-209ENST00000588857 PLD1Q13393 1074 aa23.18■■□□□ 1.3
ATG4D-209ENST00000588857 GPM6BQ13491 265 aa23.18■■□□□ 1.3
ATG4D-209ENST00000588857 ERMARDQ5T6L9 678 aa23.18■■□□□ 1.3
ATG4D-209ENST00000588857 SPOCD1Q6ZMY3 1216 aa23.18■■□□□ 1.3
ATG4D-209ENST00000588857 CYP4V2Q6ZWL3 525 aaPredicted RBP23.18■■□□□ 1.3
ATG4D-209ENST00000588857 ADAT2Q7Z6V5 191 aaKnown RBP23.18■■□□□ 1.3
ATG4D-209ENST00000588857 FAM131BQ86XD5 332 aa23.18■■□□□ 1.3
ATG4D-209ENST00000588857 DQX1Q8TE96 717 aaKnown RBP23.18■■□□□ 1.3
ATG4D-209ENST00000588857 UBXN4Q92575 508 aa23.18■■□□□ 1.3
ATG4D-209ENST00000588857 GAS2L1Q99501 681 aaPredicted RBP23.18■■□□□ 1.3
ATG4D-209ENST00000588857 OSBPL8Q9BZF1 889 aa23.18■■□□□ 1.3
ATG4D-209ENST00000588857 PIGVQ9NUD9 493 aa23.18■■□□□ 1.3
ATG4D-209ENST00000588857 CLIC5Q9NZA1 410 aa23.18■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms