RNA–Protein interactions for RNA: ENST00000569036.2

CDH3-208, Transcript of cadherin 3, humanhuman

TSL 4

Gene CDH3, Length 563 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-208ENST00000569036 NEMFO60524 1076 aa11.95□□□□□ -0.5
CDH3-208ENST00000569036 TSPAN3O60637 253 aa11.95□□□□□ -0.5
CDH3-208ENST00000569036 ABL1P00519 1130 aa11.95□□□□□ -0.5
CDH3-208ENST00000569036 SFTPCP11686 197 aa11.95□□□□□ -0.5
CDH3-208ENST00000569036 RPA1P27694 616 aa11.95□□□□□ -0.5
CDH3-208ENST00000569036 FOSBP53539 338 aa11.95□□□□□ -0.5
CDH3-208ENST00000569036 E2F1Q01094 437 aa11.95□□□□□ -0.5
CDH3-208ENST00000569036 GRIN1Q05586 938 aa11.95□□□□□ -0.5
CDH3-208ENST00000569036 STRN3Q13033 797 aa11.95□□□□□ -0.5
CDH3-208ENST00000569036 CLN3Q13286 438 aa11.95□□□□□ -0.5
CDH3-208ENST00000569036 KRT32Q14532 448 aa11.95□□□□□ -0.5
CDH3-208ENST00000569036 TMEM132DQ14C87 1099 aa11.95□□□□□ -0.5
CDH3-208ENST00000569036 ZSCAN23Q3MJ62 389 aa11.95□□□□□ -0.5
CDH3-208ENST00000569036 SFMBT2Q5VUG0 894 aa11.95□□□□□ -0.5
CDH3-208ENST00000569036 CDCP2Q5VXM1 449 aa11.95□□□□□ -0.5
CDH3-208ENST00000569036 ZPBP2Q6X784 338 aa11.95□□□□□ -0.5
CDH3-208ENST00000569036 SPATA2LQ8IUW3 424 aaPredicted RBP11.95□□□□□ -0.5
CDH3-208ENST00000569036 FAM212AQ96EL1 285 aa11.95□□□□□ -0.5
CDH3-208ENST00000569036 CCDC97Q96F63 343 aaPredicted RBP11.95□□□□□ -0.5
CDH3-208ENST00000569036 FUBP3Q96I24 572 aaKnown RBP eCLIP11.95□□□□□ -0.5
CDH3-208ENST00000569036 SPATA17Q96L03 361 aa11.95□□□□□ -0.5
CDH3-208ENST00000569036 PHF12Q96QT6 1004 aa11.95□□□□□ -0.5
CDH3-208ENST00000569036 ACBD6Q9BR61 282 aa11.95□□□□□ -0.5
CDH3-208ENST00000569036 TTLL2Q9BWV7 592 aa11.95□□□□□ -0.5
CDH3-208ENST00000569036 LRWD1Q9UFC0 647 aa11.95□□□□□ -0.5
CDH3-208ENST00000569036 NF1P21359 2839 aa11.94□□□□□ -0.5
CDH3-208ENST00000569036 KPNA7A9QM74 516 aa11.94□□□□□ -0.5
CDH3-208ENST00000569036 NEDD8-MDP1E9PL57 170 aa11.94□□□□□ -0.5
CDH3-208ENST00000569036 WNT7AO00755 349 aa11.94□□□□□ -0.5
CDH3-208ENST00000569036 EFSO43281 561 aa11.94□□□□□ -0.5
CDH3-208ENST00000569036 HIP1RO75146 1068 aa11.94□□□□□ -0.5
CDH3-208ENST00000569036 PPFIA2O75334 1257 aa11.94□□□□□ -0.5
CDH3-208ENST00000569036 FSBPO95073 299 aa11.94□□□□□ -0.5
CDH3-208ENST00000569036 ITGB2P05107 769 aa11.94□□□□□ -0.5
CDH3-208ENST00000569036 TYRP14679 529 aa11.94□□□□□ -0.5
CDH3-208ENST00000569036 MAGEA11P43364 429 aa11.94□□□□□ -0.5
CDH3-208ENST00000569036 ZNF132P52740 706 aa11.94□□□□□ -0.5
CDH3-208ENST00000569036 ASIC1P78348 528 aa11.94□□□□□ -0.5
CDH3-208ENST00000569036 MYL7Q01449 175 aa11.94□□□□□ -0.5
CDH3-208ENST00000569036 MAPK7Q13164 816 aa11.94□□□□□ -0.5
CDH3-208ENST00000569036 ENPP2Q13822 863 aa11.94□□□□□ -0.5
CDH3-208ENST00000569036 KLHL40Q2TBA0 621 aa11.94□□□□□ -0.5
CDH3-208ENST00000569036 PROX2Q3B8N5 592 aa11.94□□□□□ -0.5
CDH3-208ENST00000569036 SGO2Q562F6 1265 aa11.94□□□□□ -0.5
CDH3-208ENST00000569036 IGF2-ASQ6U949 168 aa11.94□□□□□ -0.5
CDH3-208ENST00000569036 DENND5BQ6ZUT9 1274 aa11.94□□□□□ -0.5
CDH3-208ENST00000569036 MTERF4Q7Z6M4 381 aaKnown RBP11.94□□□□□ -0.5
CDH3-208ENST00000569036 PDCL2Q8N4E4 241 aa11.94□□□□□ -0.5
CDH3-208ENST00000569036 DEPDC7Q96QD5 511 aa11.94□□□□□ -0.5
CDH3-208ENST00000569036 XPO6Q96QU8 1125 aaKnown RBP11.94□□□□□ -0.5
CDH3-208ENST00000569036 CCNL2Q96S94 520 aaPredicted RBP11.94□□□□□ -0.5
CDH3-208ENST00000569036 DUSP9Q99956 384 aaKnown RBP11.94□□□□□ -0.5
CDH3-208ENST00000569036 AGXT2Q9BYV1 514 aa11.94□□□□□ -0.5
CDH3-208ENST00000569036 DDX43Q9NXZ2 648 aaKnown RBP11.94□□□□□ -0.5
CDH3-208ENST00000569036 SH3BP1Q9Y3L3 701 aa11.94□□□□□ -0.5
CDH3-208ENST00000569036 MYH11P35749 1972 aa11.94□□□□□ -0.5
CDH3-208ENST00000569036 K7ELQ4 463 aaPredicted RBP11.93□□□□□ -0.5
CDH3-208ENST00000569036 SYNCRIPO60506 623 aaKnown RBP11.93□□□□□ -0.5
CDH3-208ENST00000569036 CSO75390 466 aaKnown RBP11.93□□□□□ -0.5
CDH3-208ENST00000569036 SEMA4FO95754 770 aa11.93□□□□□ -0.5
CDH3-208ENST00000569036 WNT1P04628 370 aa11.93□□□□□ -0.5
CDH3-208ENST00000569036 CISD3P0C7P0 127 aa11.93□□□□□ -0.5
CDH3-208ENST00000569036 PPP3CCP48454 512 aa11.93□□□□□ -0.5
CDH3-208ENST00000569036 DGKGP49619 791 aa11.93□□□□□ -0.5
CDH3-208ENST00000569036 INHBCP55103 352 aa11.93□□□□□ -0.5
CDH3-208ENST00000569036 RACK1P63244 317 aaKnown RBP11.93□□□□□ -0.5
CDH3-208ENST00000569036 BNIP3Q12983 259 aa11.93□□□□□ -0.5
CDH3-208ENST00000569036 KYAT1Q16773 422 aa11.93□□□□□ -0.5
CDH3-208ENST00000569036 SV2CQ496J9 727 aa11.93□□□□□ -0.5
CDH3-208ENST00000569036 KANSL1Q7Z3B3 1105 aa11.93□□□□□ -0.5
CDH3-208ENST00000569036 FBXL16Q8N461 479 aa11.93□□□□□ -0.5
CDH3-208ENST00000569036 WBP2Q969T9 261 aa11.93□□□□□ -0.5
CDH3-208ENST00000569036 SLC6A18Q96N87 628 aa11.93□□□□□ -0.5
CDH3-208ENST00000569036 BBS2Q9BXC9 721 aa11.93□□□□□ -0.5
CDH3-208ENST00000569036 TMEM60Q9H2L4 133 aa11.93□□□□□ -0.5
CDH3-208ENST00000569036 GJB4Q9NTQ9 266 aa11.93□□□□□ -0.5
CDH3-208ENST00000569036 L1RE1Q9UN81 338 aa11.93□□□□□ -0.5
CDH3-208ENST00000569036 DERAQ9Y315 318 aa11.93□□□□□ -0.5
CDH3-208ENST00000569036 F8P00451 2351 aa11.92□□□□□ -0.5
CDH3-208ENST00000569036 A0A1W2PNU3 283 aaPredicted RBP11.92□□□□□ -0.5
CDH3-208ENST00000569036 HCRTO43612 131 aa11.92□□□□□ -0.5
CDH3-208ENST00000569036 MAPTP10636 758 aaKnown RBP11.92□□□□□ -0.5
CDH3-208ENST00000569036 ELAVL4P26378 380 aaKnown RBP11.92□□□□□ -0.5
CDH3-208ENST00000569036 ARRB1P49407 418 aaPredicted RBP11.92□□□□□ -0.5
CDH3-208ENST00000569036 BCAT1P54687 386 aa11.92□□□□□ -0.5
CDH3-208ENST00000569036 NUCB2P80303 420 aa11.92□□□□□ -0.5
CDH3-208ENST00000569036 NR5A1Q13285 461 aa11.92□□□□□ -0.5
CDH3-208ENST00000569036 ECM1Q16610 540 aa11.92□□□□□ -0.5
CDH3-208ENST00000569036 SKIDA1Q1XH10 827 aa11.92□□□□□ -0.5
CDH3-208ENST00000569036 CD302Q8IX05 232 aa11.92□□□□□ -0.5
CDH3-208ENST00000569036 TMEM161BQ8NDZ6 487 aa11.92□□□□□ -0.5
CDH3-208ENST00000569036 TNFRSF25Q93038 417 aa11.92□□□□□ -0.5
CDH3-208ENST00000569036 SGF29Q96ES7 293 aa11.92□□□□□ -0.5
CDH3-208ENST00000569036 CEP295NLQ96MC4 621 aa11.92□□□□□ -0.5
CDH3-208ENST00000569036 SLC25A18Q9H1K4 315 aa11.92□□□□□ -0.5
CDH3-208ENST00000569036 THAP10Q9P2Z0 257 aaPredicted RBP11.92□□□□□ -0.5
CDH3-208ENST00000569036 ATXN7L1Q9ULK2 861 aaPredicted RBP11.92□□□□□ -0.5
CDH3-208ENST00000569036 SATB2Q9UPW6 733 aa11.92□□□□□ -0.5
CDH3-208ENST00000569036 CELSR1Q9NYQ6 3014 aa11.92□□□□□ -0.5
CDH3-208ENST00000569036 KIF26BQ2KJY2 2108 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms