RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 TTLL10Q6ZVT0 673 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 ZC3HAV1Q7Z2W4 902 aaKnown RBP3.24□□□□□ -1.89
VPS35-209ENST00000568642 PPP1R3BQ86XI6 285 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 KSR1Q8IVT5 923 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 IQCF2Q8IXL9 164 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 Q8N1Y9 231 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 TTC39CQ8N584 583 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 DCBLD1Q8N8Z6 715 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 ARRDC4Q8NCT1 418 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 RNF214Q8ND24 703 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 PRSS33Q8NF86 280 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 PPP1R14CQ8TAE6 165 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 GABPB2Q8TAK5 448 aaPredicted RBP3.24□□□□□ -1.89
VPS35-209ENST00000568642 FIBINQ8TAL6 211 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 CEP76Q8TAP6 659 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 NCSTNQ92542 709 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 CUL5Q93034 780 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 UTP4Q969X6 686 aaKnown RBP3.24□□□□□ -1.89
VPS35-209ENST00000568642 KTI12Q96EK9 354 aaPredicted RBP3.24□□□□□ -1.89
VPS35-209ENST00000568642 PGAP3Q96FM1 320 aaPredicted RBP3.24□□□□□ -1.89
VPS35-209ENST00000568642 FAM84AQ96KN4 292 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 SNX22Q96L94 193 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 CFAP53Q96M91 514 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 MMP19Q99542 508 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 FUZQ9BT04 418 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 HGH1Q9BTY7 390 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 C1orf43Q9BWL3 253 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 JAM3Q9BX67 310 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 GSX1Q9H4S2 264 aaPredicted RBP3.24□□□□□ -1.89
VPS35-209ENST00000568642 OPA3Q9H6K4 179 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 SP110Q9HB58 689 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 G6PC2Q9NQR9 355 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 ACSS2Q9NR19 701 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 SERINC1Q9NRX5 453 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 ADARB2Q9NS39 739 aaKnown RBP3.24□□□□□ -1.89
VPS35-209ENST00000568642 LMCD1Q9NZU5 365 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 PI4KBQ9UBF8 816 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 SUN2Q9UH99 717 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 OGDHLQ9ULD0 1010 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 DAPP1Q9UN19 280 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 C2CD2Q9Y426 696 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 LAMB1P07942 1786 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 POLR3AO14802 1390 aaPredicted RBP3.24□□□□□ -1.89
VPS35-209ENST00000568642 KDRP35968 1356 aa3.24□□□□□ -1.89
VPS35-209ENST00000568642 PIEZO2Q9H5I5 2752 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 CCDC196A0A1B0GTZ2 297 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 A4D1N5 150 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 NPIPB15A6NHN6 443 aaPredicted RBP3.23□□□□□ -1.89
VPS35-209ENST00000568642 FAM90A20PA6NIJ5 464 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 FAM90A27PA6NNH2 459 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 H7BY64 318 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 PODXLO00592 558 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 WNT10BO00744 389 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 VILLO15195 856 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 SLC16A6O15403 523 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 SGTAO43765 313 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 DTNBO60941 627 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 CLASP2O75122 1294 aaKnown RBP3.23□□□□□ -1.89
VPS35-209ENST00000568642 SMNDC1O75940 238 aaKnown RBP eCLIP3.23□□□□□ -1.89
VPS35-209ENST00000568642 SNX4O95219 450 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 OR2C1O95371 312 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 C4BPAP04003 597 aaKnown RBP3.23□□□□□ -1.89
VPS35-209ENST00000568642 BRAFP15056 766 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 GAP43P17677 238 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 SDHAP31040 664 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 TCF7P36402 384 aaPredicted RBP3.23□□□□□ -1.89
VPS35-209ENST00000568642 THPOP40225 353 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 MSH2P43246 934 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 CPA2P48052 419 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 MLLT6P55198 1093 aaPredicted RBP3.23□□□□□ -1.89
VPS35-209ENST00000568642 ARF3P61204 181 aaPredicted RBP3.23□□□□□ -1.89
VPS35-209ENST00000568642 CCT2P78371 535 aaKnown RBP3.23□□□□□ -1.89
VPS35-209ENST00000568642 ST5P78524 1137 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 ARF1P84077 181 aaKnown RBP3.23□□□□□ -1.89
VPS35-209ENST00000568642 TFF2Q03403 129 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 SREBF2Q12772 1141 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 PTP4A2Q12974 167 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 SLC12A1Q13621 1099 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 ZKSCAN8Q15776 578 aaPredicted RBP3.23□□□□□ -1.89
VPS35-209ENST00000568642 CRY1Q16526 586 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 HFEQ30201 348 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 MAJINQ3KP22 176 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 TRIM60Q495X7 471 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 PAN2Q504Q3 1202 aaKnown RBP3.23□□□□□ -1.89
VPS35-209ENST00000568642 HSP90AB3PQ58FF7 597 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 RRAGBQ5VZM2 374 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 RAP1GAP2Q684P5 730 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 TPGS2Q68CL5 300 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 FAM117BQ6P1L5 589 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 HEATR3Q7Z4Q2 680 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 FAM90A1Q86YD7 464 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 DIS3L2Q8IYB7 885 aaKnown RBP3.23□□□□□ -1.89
VPS35-209ENST00000568642 GOLGA6L2Q8N9W4 650 aaPredicted RBP3.23□□□□□ -1.89
VPS35-209ENST00000568642 GSDMBQ8TAX9 411 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 ZNF507Q8TCN5 953 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 NEK9Q8TD19 979 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 AFG1LQ8WV93 481 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 RUFY2Q8WXA3 655 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 KIF1BPQ96EK5 621 aa3.23□□□□□ -1.89
VPS35-209ENST00000568642 KLHDC7BQ96G42 594 aa3.23□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms