RNA–Protein interactions for RNA: ENST00000557352.1

VRK1-207, Transcript of vaccinia related kinase 1, humanhuman

TSL 5

Gene VRK1, Length 599 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-207ENST00000557352 SRGAP1Q7Z6B7 1085 aa5.03□□□□□ -1.6
VRK1-207ENST00000557352 UBE2Q1Q7Z7E8 422 aa5.03□□□□□ -1.6
VRK1-207ENST00000557352 ANKRD13BQ86YJ7 626 aa5.03□□□□□ -1.6
VRK1-207ENST00000557352 SUGP2Q8IX01 1082 aaKnown RBP eCLIP5.03□□□□□ -1.6
VRK1-207ENST00000557352 FAM71DQ8N9W8 422 aa5.03□□□□□ -1.6
VRK1-207ENST00000557352 WASF1Q92558 559 aa5.03□□□□□ -1.6
VRK1-207ENST00000557352 ZDHHC12Q96GR4 267 aa5.03□□□□□ -1.6
VRK1-207ENST00000557352 MSLNLQ96KJ4 702 aa5.03□□□□□ -1.6
VRK1-207ENST00000557352 TTC3P53804 2025 aa5.02□□□□□ -1.61
VRK1-207ENST00000557352 FAM90A10PA6NDY2 464 aa5.02□□□□□ -1.61
VRK1-207ENST00000557352 CA12O43570 354 aa5.02□□□□□ -1.61
VRK1-207ENST00000557352 MT-ND5P03915 603 aa5.02□□□□□ -1.61
VRK1-207ENST00000557352 SCP2P22307 547 aa5.02□□□□□ -1.61
VRK1-207ENST00000557352 RBL1P28749 1068 aa5.02□□□□□ -1.61
VRK1-207ENST00000557352 TACR3P29371 465 aa5.02□□□□□ -1.61
VRK1-207ENST00000557352 TKTP29401 623 aaKnown RBP5.02□□□□□ -1.61
VRK1-207ENST00000557352 TXNL4AP83876 142 aaKnown RBP5.02□□□□□ -1.61
VRK1-207ENST00000557352 HSF1Q00613 529 aa5.02□□□□□ -1.61
VRK1-207ENST00000557352 PFKFB3Q16875 520 aaPredicted RBP5.02□□□□□ -1.61
VRK1-207ENST00000557352 SLC9C1Q4G0N8 1177 aa5.02□□□□□ -1.61
VRK1-207ENST00000557352 GRHL2Q6ISB3 625 aa5.02□□□□□ -1.61
VRK1-207ENST00000557352 MZT2AQ6P582 158 aa5.02□□□□□ -1.61
VRK1-207ENST00000557352 ZNF548Q8NEK5 533 aaPredicted RBP5.02□□□□□ -1.61
VRK1-207ENST00000557352 IPCEF1Q8WWN9 437 aaPredicted RBP5.02□□□□□ -1.61
VRK1-207ENST00000557352 SELENOOQ9BVL4 669 aa5.02□□□□□ -1.61
VRK1-207ENST00000557352 POT1Q9NUX5 634 aa5.02□□□□□ -1.61
VRK1-207ENST00000557352 SEMA5BQ9P283 1151 aa5.02□□□□□ -1.61
VRK1-207ENST00000557352 HPSEQ9Y251 543 aa5.02□□□□□ -1.61
VRK1-207ENST00000557352 COL15A1P39059 1388 aa5.02□□□□□ -1.61
VRK1-207ENST00000557352 CD8B2A6NJW9 211 aa5.01□□□□□ -1.61
VRK1-207ENST00000557352 MGEA5O60502 916 aa5.01□□□□□ -1.61
VRK1-207ENST00000557352 S100BP04271 92 aaPredicted RBP5.01□□□□□ -1.61
VRK1-207ENST00000557352 PEX2P28328 305 aa5.01□□□□□ -1.61
VRK1-207ENST00000557352 CCKBRP32239 447 aa5.01□□□□□ -1.61
VRK1-207ENST00000557352 HTR7P34969 479 aa5.01□□□□□ -1.61
VRK1-207ENST00000557352 ME1P48163 572 aa5.01□□□□□ -1.61
VRK1-207ENST00000557352 FAM193AP78312 1265 aa5.01□□□□□ -1.61
VRK1-207ENST00000557352 STIM1Q13586 685 aa5.01□□□□□ -1.61
VRK1-207ENST00000557352 GRM3Q14832 879 aa5.01□□□□□ -1.61
VRK1-207ENST00000557352 KPNB1Q14974 876 aaKnown RBP5.01□□□□□ -1.61
VRK1-207ENST00000557352 RUSC1-AS1Q66K80 236 aa5.01□□□□□ -1.61
VRK1-207ENST00000557352 ARFGAP1Q8N6T3 406 aa5.01□□□□□ -1.61
VRK1-207ENST00000557352 WIPF2Q8TF74 440 aaPredicted RBP5.01□□□□□ -1.61
VRK1-207ENST00000557352 PRR11Q96HE9 360 aaPredicted RBP5.01□□□□□ -1.61
VRK1-207ENST00000557352 ZFYVE19Q96K21 471 aa5.01□□□□□ -1.61
VRK1-207ENST00000557352 ZCWPW1Q9H0M4 648 aa5.01□□□□□ -1.61
VRK1-207ENST00000557352 VPS45Q9NRW7 570 aa5.01□□□□□ -1.61
VRK1-207ENST00000557352 ZNF212Q9UDV6 495 aa5.01□□□□□ -1.61
VRK1-207ENST00000557352 ZNF580Q9UK33 172 aa5.01□□□□□ -1.61
VRK1-207ENST00000557352 HS3ST3B1Q9Y662 390 aa5.01□□□□□ -1.61
VRK1-207ENST00000557352 OAZ2O95190 189 aa5□□□□□ -1.61
VRK1-207ENST00000557352 MBPP02686 304 aaPredicted RBP5□□□□□ -1.61
VRK1-207ENST00000557352 TMEM225BP0DP42 221 aa5□□□□□ -1.61
VRK1-207ENST00000557352 PSG1P11464 419 aa5□□□□□ -1.61
VRK1-207ENST00000557352 CCKARP32238 428 aa5□□□□□ -1.61
VRK1-207ENST00000557352 CCDC15Q0P6D6 951 aa5□□□□□ -1.61
VRK1-207ENST00000557352 FHL3Q13643 280 aa5□□□□□ -1.61
VRK1-207ENST00000557352 FAM110CQ1W6H9 321 aa5□□□□□ -1.61
VRK1-207ENST00000557352 DDX51Q8N8A6 666 aaKnown RBP eCLIP5□□□□□ -1.61
VRK1-207ENST00000557352 JDP2Q8WYK2 163 aa5□□□□□ -1.61
VRK1-207ENST00000557352 SNX22Q96L94 193 aa5□□□□□ -1.61
VRK1-207ENST00000557352 FAM227BQ96M60 508 aa5□□□□□ -1.61
VRK1-207ENST00000557352 TRMOQ9BU70 441 aa5□□□□□ -1.61
VRK1-207ENST00000557352 CINPQ9BW66 212 aaPredicted RBP5□□□□□ -1.61
VRK1-207ENST00000557352 TM2D2Q9BX73 214 aa5□□□□□ -1.61
VRK1-207ENST00000557352 ADGRE3Q9BY15 652 aa5□□□□□ -1.61
VRK1-207ENST00000557352 KRTAP2-2Q9BYT5 123 aa5□□□□□ -1.61
VRK1-207ENST00000557352 NUAK2Q9H093 628 aa5□□□□□ -1.61
VRK1-207ENST00000557352 AS3MTQ9HBK9 375 aa5□□□□□ -1.61
VRK1-207ENST00000557352 ZSCAN21Q9Y5A6 473 aaPredicted RBP5□□□□□ -1.61
VRK1-207ENST00000557352 MYO15BQ96JP2 1530 aa5□□□□□ -1.61
VRK1-207ENST00000557352 SPATA31A1Q5TZJ5 1347 aa4.99□□□□□ -1.61
VRK1-207ENST00000557352 VSTM5A8MXK1 200 aa4.99□□□□□ -1.61
VRK1-207ENST00000557352 F8W8V4 182 aa4.99□□□□□ -1.61
VRK1-207ENST00000557352 RRHO14718 337 aa4.99□□□□□ -1.61
VRK1-207ENST00000557352 INPPL1O15357 1258 aa4.99□□□□□ -1.61
VRK1-207ENST00000557352 TSPAN6O43657 245 aa4.99□□□□□ -1.61
VRK1-207ENST00000557352 TMIGD3P0DMS9 266 aaPredicted RBP4.99□□□□□ -1.61
VRK1-207ENST00000557352 GALNSP34059 522 aa4.99□□□□□ -1.61
VRK1-207ENST00000557352 CPA2P48052 419 aa4.99□□□□□ -1.61
VRK1-207ENST00000557352 JAK3P52333 1124 aa4.99□□□□□ -1.61
VRK1-207ENST00000557352 MTAPQ13126 283 aa4.99□□□□□ -1.61
VRK1-207ENST00000557352 DNASE1L3Q13609 305 aa4.99□□□□□ -1.61
VRK1-207ENST00000557352 GBX1Q14549 363 aa4.99□□□□□ -1.61
VRK1-207ENST00000557352 KLHL22Q53GT1 634 aa4.99□□□□□ -1.61
VRK1-207ENST00000557352 EARS2Q5JPH6 523 aaKnown RBP4.99□□□□□ -1.61
VRK1-207ENST00000557352 PPP4R4Q6NUP7 873 aa4.99□□□□□ -1.61
VRK1-207ENST00000557352 P3H2Q8IVL5 708 aa4.99□□□□□ -1.61
VRK1-207ENST00000557352 SDR16C5Q8N3Y7 309 aa4.99□□□□□ -1.61
VRK1-207ENST00000557352 FSTL5Q8N475 847 aaPredicted RBP4.99□□□□□ -1.61
VRK1-207ENST00000557352 MBD3L2Q8NHZ7 208 aaPredicted RBP4.99□□□□□ -1.61
VRK1-207ENST00000557352 SAP30LQ9HAJ7 183 aa4.99□□□□□ -1.61
VRK1-207ENST00000557352 MLXIPLQ9NP71 852 aa4.99□□□□□ -1.61
VRK1-207ENST00000557352 TBC1D23Q9NUY8 699 aa4.99□□□□□ -1.61
VRK1-207ENST00000557352 FRMPD2Q68DX3 1309 aaPredicted RBP4.98□□□□□ -1.61
VRK1-207ENST00000557352 C16orf96A6NNT2 1141 aa4.98□□□□□ -1.61
VRK1-207ENST00000557352 H3BNX3 289 aa4.98□□□□□ -1.61
VRK1-207ENST00000557352 WDR47O94967 919 aa4.98□□□□□ -1.61
VRK1-207ENST00000557352 PLAUP00749 431 aa4.98□□□□□ -1.61
VRK1-207ENST00000557352 CRYABP02511 175 aaKnown RBP4.98□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms