RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 RGS4P49798 205 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 WASHC5Q12768 1159 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 NR1D2Q14995 579 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 RBM44Q6ZP01 1051 aaKnown RBP13.18□□□□□ -0.3
PTCH1-212ENST00000546744 LRP10Q7Z4F1 713 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 CDH24Q86UP0 819 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 TTC30AQ86WT1 665 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 RNF135Q8IUD6 432 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 ART4Q93070 314 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 EBF2Q9HAK2 575 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 MINPP1Q9UNW1 487 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 ACOT9Q9Y305 439 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 DGKIO75912 1065 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 TFE3P19532 575 aaPredicted RBP13.18□□□□□ -0.3
PTCH1-212ENST00000546744 AKT1P31749 480 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 SLC27A3Q5K4L6 730 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 TDRD5Q8NAT2 981 aaKnown RBP13.18□□□□□ -0.3
PTCH1-212ENST00000546744 TBCBQ99426 244 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 EPB41L4AQ9HCS5 686 aaPredicted RBP13.18□□□□□ -0.3
PTCH1-212ENST00000546744 CYLDQ9NQC7 956 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 CRNNQ9UBG3 495 aaPredicted RBP13.18□□□□□ -0.3
PTCH1-212ENST00000546744 PSMD13Q9UNM6 376 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 KLHL20Q9Y2M5 609 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 KDM3BQ7LBC6 1761 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 IDH3BO43837 385 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 KRT36O76013 467 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 GARTP22102 1010 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 PIK3R1P27986 724 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 ADSSP30520 456 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 KCTD21Q4G0X4 260 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 RIPOR1Q6ZS17 1223 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 SPATA20Q8TB22 786 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 NSUN4Q96CB9 384 aaKnown RBP13.18□□□□□ -0.3
PTCH1-212ENST00000546744 FAM193BQ96PV7 902 aaPredicted RBP13.18□□□□□ -0.3
PTCH1-212ENST00000546744 C17orf80Q9BSJ5 609 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 RMND5AQ9H871 391 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 OSGEPQ9NPF4 335 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 NYAP2Q9P242 653 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 EIF3LQ9Y262 564 aaKnown RBP13.18□□□□□ -0.3
PTCH1-212ENST00000546744 RPS6KL1Q9Y6S9 549 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 MRC1P22897 1456 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 F5H6K3 240 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 TPST1O60507 370 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 TRMUO75648 421 aaKnown RBP13.18□□□□□ -0.3
PTCH1-212ENST00000546744 DDHD2O94830 711 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 LYNP07948 512 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 RARAP10276 462 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 KLRC3Q07444 240 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 TRAF2Q12933 501 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 STXBP2Q15833 593 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 SPDYAQ5MJ70 313 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 LRRC38Q5VT99 294 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 EID3Q8N140 333 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 TFB1MQ8WVM0 346 aaKnown RBP13.18□□□□□ -0.3
PTCH1-212ENST00000546744 ATG4AQ8WYN0 398 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 GPR101Q96P66 508 aaPredicted RBP13.18□□□□□ -0.3
PTCH1-212ENST00000546744 SSU72Q9NP77 194 aaKnown RBP13.18□□□□□ -0.3
PTCH1-212ENST00000546744 IARS2Q9NSE4 1012 aaKnown RBP13.18□□□□□ -0.3
PTCH1-212ENST00000546744 FBXO28Q9NVF7 368 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 SLC39A10Q9ULF5 831 aa13.18□□□□□ -0.3
PTCH1-212ENST00000546744 MYO1GB0I1T2 1018 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 RBP5P82980 135 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 ITGADQ13349 1161 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 PPIL2Q13356 520 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 RFX4Q33E94 735 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 GRTP1Q5TC63 336 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 ZNF572Q7Z3I7 529 aaPredicted RBP13.17□□□□□ -0.3
PTCH1-212ENST00000546744 OR7A2PQ8NGA2 310 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 NAT14Q8WUY8 206 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 CARD8Q9Y2G2 431 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 DPPA5A6NC42 116 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 CYTH3O43739 400 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 SMNDC1O75940 238 aaKnown RBP eCLIP13.17□□□□□ -0.3
PTCH1-212ENST00000546744 PROCP04070 461 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 CASP7P55210 303 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 PTCD3Q96EY7 689 aaKnown RBP13.17□□□□□ -0.3
PTCH1-212ENST00000546744 PLEKHA8Q96JA3 519 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 ZNF333Q96JL9 665 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 DHX33Q9H6R0 707 aaKnown RBP13.17□□□□□ -0.3
PTCH1-212ENST00000546744 CCNB1IP1Q9NPC3 277 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 SLC8A2Q9UPR5 921 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 COL18A1P39060 1754 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 SCN11AQ9UI33 1791 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 XIRP1Q702N8 1843 aaKnown RBP13.17□□□□□ -0.3
PTCH1-212ENST00000546744 SAGE2PA6NJ88 616 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 RBAK-RBAKDNI3L0D1 243 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 ZSCAN9O15535 394 aaPredicted RBP13.17□□□□□ -0.3
PTCH1-212ENST00000546744 TGM2P21980 687 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 MAPK1P28482 360 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 CDC42EP1Q00587 391 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 NFYCQ13952 458 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 KATNAL2Q8IYT4 538 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 KBTBD8Q8NFY9 601 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 ADAM33Q9BZ11 813 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 OSBPL7Q9BZF2 842 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 SP110Q9HB58 689 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 TMEM161AQ9NX61 479 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 ZMYM2Q9UBW7 1377 aa13.17□□□□□ -0.3
PTCH1-212ENST00000546744 PRPF4O43172 522 aaKnown RBP eCLIP13.16□□□□□ -0.3
PTCH1-212ENST00000546744 RARBP10826 455 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms