RNA–Protein interactions for RNA: ENST00000545889.5

CLIP1-218, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 4,633 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-218ENST00000545889 MPP3Q13368 585 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 ZNF211Q13398 564 aaPredicted RBP8.89□□□□□ -0.99
CLIP1-218ENST00000545889 MORF4L2Q15014 288 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 UGP2Q16851 508 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 ANKRD20A8PQ5CZ79 823 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 SPDYAQ5MJ70 313 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 TMEM63BQ5T3F8 832 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 GRAMD4Q6IC98 578 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 SLC27A1Q6PCB7 646 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 TMEM110Q86TL2 294 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 UNC45BQ8IWX7 931 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 CEP70Q8NHQ1 597 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 MBOAT7Q96N66 472 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 CDK5RAP1Q96SZ6 601 aaKnown RBP8.89□□□□□ -0.99
CLIP1-218ENST00000545889 AGPAT1Q99943 283 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 ASPSCR1Q9BZE9 553 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 UPF3AQ9H1J1 476 aaKnown RBP8.89□□□□□ -0.99
CLIP1-218ENST00000545889 AASDHPPTQ9NRN7 309 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.89□□□□□ -0.99
CLIP1-218ENST00000545889 APEX2Q9UBZ4 518 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 TRIM10Q9UDY6 481 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 LNPEPQ9UIQ6 1025 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 LAMA4Q16363 1823 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 DHX15O43143 795 aaKnown RBP8.89□□□□□ -0.99
CLIP1-218ENST00000545889 E2F6O75461 281 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 GTF2H1P32780 548 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 MAGEA8P43361 318 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 GEMIN4P57678 1058 aaKnown RBP8.89□□□□□ -0.99
CLIP1-218ENST00000545889 SNRPFP62306 86 aaKnown RBP8.89□□□□□ -0.99
CLIP1-218ENST00000545889 LCA5Q86VQ0 697 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 TC2NQ8N9U0 490 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 ZIM3Q96PE6 472 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 C1QTNF7Q9BXJ2 289 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 BRD9Q9H8M2 597 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 ASAH2Q9NR71 780 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 RAD18Q9NS91 495 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 KCND1Q9NSA2 647 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 DIS3Q9Y2L1 958 aaKnown RBP8.89□□□□□ -0.99
CLIP1-218ENST00000545889 PCDHB9Q9Y5E1 797 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 POLR2AP24928 1970 aaKnown RBP8.89□□□□□ -0.99
CLIP1-218ENST00000545889 ADAMTSL1Q8N6G6 1762 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 SLC16A3O15427 465 aaKnown RBP8.89□□□□□ -0.99
CLIP1-218ENST00000545889 PMPCBO75439 489 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 SUN1O94901 812 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 DARSP14868 501 aaKnown RBP8.89□□□□□ -0.99
CLIP1-218ENST00000545889 AARSP49588 968 aaKnown RBP eCLIP8.89□□□□□ -0.99
CLIP1-218ENST00000545889 HIST2H2ACQ16777 129 aaPredicted RBP8.89□□□□□ -0.99
CLIP1-218ENST00000545889 FNDC3BQ53EP0 1204 aaKnown RBP8.89□□□□□ -0.99
CLIP1-218ENST00000545889 HIST2H2AA3Q6FI13 130 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 WDR93Q6P2C0 686 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 DDIASQ8IXT1 998 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 SPATA18Q8TC71 538 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 AGAP11Q8TF27 550 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 LRRC15Q8TF66 581 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 PTPRN2Q92932 1015 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 TMA16Q96EY4 203 aaKnown RBP8.89□□□□□ -0.99
CLIP1-218ENST00000545889 MS4A4AQ96JQ5 239 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 MCEEQ96PE7 176 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 CORO1BQ9BR76 489 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 LRRC1Q9BTT6 524 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 CERS4Q9HA82 394 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 DDX43Q9NXZ2 648 aaKnown RBP8.89□□□□□ -0.99
CLIP1-218ENST00000545889 NDOR1Q9UHB4 597 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 KIAA1257Q9ULG3 409 aa8.89□□□□□ -0.99
CLIP1-218ENST00000545889 SLC10A3P09131 477 aa8.88□□□□□ -0.99
CLIP1-218ENST00000545889 ELF3P78545 371 aaPredicted RBP8.88□□□□□ -0.99
CLIP1-218ENST00000545889 RBBP7Q16576 425 aa8.88□□□□□ -0.99
CLIP1-218ENST00000545889 CRLF3Q8IUI8 442 aa8.88□□□□□ -0.99
CLIP1-218ENST00000545889 BORCS6Q96GS4 357 aa8.88□□□□□ -0.99
CLIP1-218ENST00000545889 COPS7BQ9H9Q2 264 aaPredicted RBP8.88□□□□□ -0.99
CLIP1-218ENST00000545889 DNAAF2Q9NVR5 837 aaKnown RBP8.88□□□□□ -0.99
CLIP1-218ENST00000545889 ARHGEF38Q9NXL2 777 aa8.88□□□□□ -0.99
CLIP1-218ENST00000545889 TIAM2Q8IVF5 1701 aa8.88□□□□□ -0.99
CLIP1-218ENST00000545889 ZSCAN9O15535 394 aaPredicted RBP8.88□□□□□ -0.99
CLIP1-218ENST00000545889 NDUFB5O43674 189 aa8.88□□□□□ -0.99
CLIP1-218ENST00000545889 COQ9O75208 318 aa8.88□□□□□ -0.99
CLIP1-218ENST00000545889 RTN2O75298 545 aa8.88□□□□□ -0.99
CLIP1-218ENST00000545889 PALMO75781 387 aa8.88□□□□□ -0.99
CLIP1-218ENST00000545889 RASSF9O75901 435 aa8.88□□□□□ -0.99
CLIP1-218ENST00000545889 ITGBL1O95965 494 aaPredicted RBP8.88□□□□□ -0.99
CLIP1-218ENST00000545889 GYPCP04921 128 aa8.88□□□□□ -0.99
CLIP1-218ENST00000545889 YWHAQP27348 245 aa8.88□□□□□ -0.99
CLIP1-218ENST00000545889 MZF1P28698 734 aaPredicted RBP8.88□□□□□ -0.99
CLIP1-218ENST00000545889 GRK3P35626 688 aa8.88□□□□□ -0.99
CLIP1-218ENST00000545889 FNTAP49354 379 aa8.88□□□□□ -0.99
CLIP1-218ENST00000545889 APLP1P51693 650 aa8.88□□□□□ -0.99
CLIP1-218ENST00000545889 MRPS35P82673 323 aaKnown RBP8.88□□□□□ -0.99
CLIP1-218ENST00000545889 GFPT1Q06210 699 aaPredicted RBP8.88□□□□□ -0.99
CLIP1-218ENST00000545889 LRRC74AQ0VAA2 488 aa8.88□□□□□ -0.99
CLIP1-218ENST00000545889 PRKAA1Q13131 559 aa8.88□□□□□ -0.99
CLIP1-218ENST00000545889 SLC44A4Q53GD3 710 aa8.88□□□□□ -0.99
CLIP1-218ENST00000545889 PPP1R15BQ5SWA1 713 aa8.88□□□□□ -0.99
CLIP1-218ENST00000545889 ZNF507Q8TCN5 953 aa8.88□□□□□ -0.99
CLIP1-218ENST00000545889 PRCCQ92733 491 aaPredicted RBP8.88□□□□□ -0.99
CLIP1-218ENST00000545889 KRT35Q92764 455 aa8.88□□□□□ -0.99
CLIP1-218ENST00000545889 HIC2Q96JB3 615 aa8.88□□□□□ -0.99
CLIP1-218ENST00000545889 CCDC138Q96M89 665 aa8.88□□□□□ -0.99
CLIP1-218ENST00000545889 OMDQ99983 421 aa8.88□□□□□ -0.99
CLIP1-218ENST00000545889 MTMR12Q9C0I1 747 aa8.88□□□□□ -0.99
CLIP1-218ENST00000545889 MAF1Q9H063 256 aa8.88□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms