RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, human

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
YBX3-216	ENST00000544622	ALYREF	Q86V81	257 aa	Known RBP	11.98	□□□□□ -0.49
YBX3-216	ENST00000544622	TMEM25	Q86YD3	366 aa		11.98	□□□□□ -0.49
YBX3-216	ENST00000544622	ETFBKMT	Q8IXQ9	262 aa		11.98	□□□□□ -0.49
YBX3-216	ENST00000544622	PHTF2	Q8N3S3	785 aa		11.98	□□□□□ -0.49
YBX3-216	ENST00000544622	WDTC1	Q8N5D0	677 aa		11.98	□□□□□ -0.49
YBX3-216	ENST00000544622	IRGQ	Q8WZA9	623 aa		11.98	□□□□□ -0.49
YBX3-216	ENST00000544622	P2RY11	Q96G91	374 aa		11.98	□□□□□ -0.49
YBX3-216	ENST00000544622	SLC4A5	Q9BY07	1137 aa		11.98	□□□□□ -0.49
YBX3-216	ENST00000544622	FAM126A	Q9BYI3	521 aa	Predicted RBP	11.98	□□□□□ -0.49
YBX3-216	ENST00000544622	NACA2	Q9H009	215 aa		11.98	□□□□□ -0.49
YBX3-216	ENST00000544622	SPHK2	Q9NRA0	654 aa		11.98	□□□□□ -0.49
YBX3-216	ENST00000544622	CYTH4	Q9UIA0	394 aa		11.98	□□□□□ -0.49
YBX3-216	ENST00000544622	DNAJC12	Q9UKB3	198 aa		11.98	□□□□□ -0.49
YBX3-216	ENST00000544622	ZNF292	O60281	2723 aa		11.97	□□□□□ -0.49
YBX3-216	ENST00000544622	ANTXRL	A6NF34	631 aa		11.97	□□□□□ -0.49
YBX3-216	ENST00000544622	MED7	O43513	233 aa		11.97	□□□□□ -0.49
YBX3-216	ENST00000544622	KRT5	P13647	590 aa		11.97	□□□□□ -0.49
YBX3-216	ENST00000544622	GNA15	P30679	374 aa		11.97	□□□□□ -0.49
YBX3-216	ENST00000544622	SLC6A11	P48066	632 aa		11.97	□□□□□ -0.49
YBX3-216	ENST00000544622	RGS7	P49802	495 aa		11.97	□□□□□ -0.49
YBX3-216	ENST00000544622	MYL5	Q02045	173 aa		11.97	□□□□□ -0.49
YBX3-216	ENST00000544622	GAD2	Q05329	585 aa		11.97	□□□□□ -0.49
YBX3-216	ENST00000544622	KRT31	Q15323	416 aa		11.97	□□□□□ -0.49
YBX3-216	ENST00000544622	TRIP4	Q15650	581 aa	Predicted RBP	11.97	□□□□□ -0.49
YBX3-216	ENST00000544622	STX1A	Q16623	288 aa		11.97	□□□□□ -0.49
YBX3-216	ENST00000544622	ARHGAP44	Q17R89	818 aa		11.97	□□□□□ -0.49
YBX3-216	ENST00000544622	DENND1B	Q6P3S1	775 aa		11.97	□□□□□ -0.49
YBX3-216	ENST00000544622	C12orf40	Q86WS4	652 aa		11.97	□□□□□ -0.49
YBX3-216	ENST00000544622	SCUBE3	Q8IX30	993 aa		11.97	□□□□□ -0.49
YBX3-216	ENST00000544622	FAM217A	Q8IXS0	508 aa		11.97	□□□□□ -0.49
YBX3-216	ENST00000544622	FAM71A	Q8IYT1	594 aa		11.97	□□□□□ -0.49
YBX3-216	ENST00000544622	SIX6OS1	Q8N1H7	587 aa		11.97	□□□□□ -0.49
YBX3-216	ENST00000544622	CLEC4C	Q8WTT0	213 aa		11.97	□□□□□ -0.49
YBX3-216	ENST00000544622	EXOC4	Q96A65	974 aa		11.97	□□□□□ -0.49
YBX3-216	ENST00000544622	SEMA4A	Q9H3S1	761 aa		11.97	□□□□□ -0.49
YBX3-216	ENST00000544622	ABCC13	Q9NSE7	274 aa		11.97	□□□□□ -0.49
YBX3-216	ENST00000544622	MARK1	Q9P0L2	795 aa		11.97	□□□□□ -0.49
YBX3-216	ENST00000544622	LIMA1	Q9UHB6	759 aa	Known RBP	11.97	□□□□□ -0.49
YBX3-216	ENST00000544622	FBXO10	Q9UK96	956 aa		11.97	□□□□□ -0.49
YBX3-216	ENST00000544622	PCDHGC3	Q9UN70	934 aa		11.97	□□□□□ -0.49
YBX3-216	ENST00000544622	PCDHGA2	Q9Y5H1	932 aa		11.97	□□□□□ -0.49
YBX3-216	ENST00000544622		R4GN57	208 aa		11.97	□□□□□ -0.49
YBX3-216	ENST00000544622	FANCM	Q8IYD8	2048 aa		11.97	□□□□□ -0.49
YBX3-216	ENST00000544622	MYO16	Q9Y6X6	1858 aa		11.97	□□□□□ -0.49
YBX3-216	ENST00000544622	RIF1	Q5UIP0	2472 aa	Known RBP	11.96	□□□□□ -0.49
YBX3-216	ENST00000544622	PRR23A	A6NEV1	266 aa		11.96	□□□□□ -0.49
YBX3-216	ENST00000544622	RNF40	O75150	1001 aa		11.96	□□□□□ -0.49
YBX3-216	ENST00000544622	LETM1	O95202	739 aa	Predicted RBP	11.96	□□□□□ -0.49
YBX3-216	ENST00000544622	ADH1C	P00326	375 aa		11.96	□□□□□ -0.49
YBX3-216	ENST00000544622	IRF1	P10914	325 aa		11.96	□□□□□ -0.49
YBX3-216	ENST00000544622	ADH5	P11766	374 aa		11.96	□□□□□ -0.49
YBX3-216	ENST00000544622	LCP1	P13796	627 aa		11.96	□□□□□ -0.49
YBX3-216	ENST00000544622	UCHL3	P15374	230 aa		11.96	□□□□□ -0.49
YBX3-216	ENST00000544622	HOXC13	P31276	330 aa		11.96	□□□□□ -0.49
YBX3-216	ENST00000544622	TYRO3	Q06418	890 aa		11.96	□□□□□ -0.49
YBX3-216	ENST00000544622	GOLGA8F	Q08AF8	430 aa		11.96	□□□□□ -0.49
YBX3-216	ENST00000544622	GOLGA8DP	Q0D2H9	430 aa		11.96	□□□□□ -0.49
YBX3-216	ENST00000544622	EFEMP1	Q12805	493 aa		11.96	□□□□□ -0.49
YBX3-216	ENST00000544622	MSANTD2	Q6P1R3	559 aa		11.96	□□□□□ -0.49
YBX3-216	ENST00000544622	BEND5	Q7L4P6	421 aa		11.96	□□□□□ -0.49
YBX3-216	ENST00000544622	ASCL5	Q7RTU5	278 aa		11.96	□□□□□ -0.49
YBX3-216	ENST00000544622	MIB1	Q86YT6	1006 aa		11.96	□□□□□ -0.49
YBX3-216	ENST00000544622	SUMF1	Q8NBK3	374 aa		11.96	□□□□□ -0.49
YBX3-216	ENST00000544622	NKD2	Q969F2	451 aa	Predicted RBP	11.96	□□□□□ -0.49
YBX3-216	ENST00000544622	FUCA2	Q9BTY2	467 aa		11.96	□□□□□ -0.49
YBX3-216	ENST00000544622	LHX5	Q9H2C1	402 aa		11.96	□□□□□ -0.49
YBX3-216	ENST00000544622	PLCB1	Q9NQ66	1216 aa		11.96	□□□□□ -0.49
YBX3-216	ENST00000544622	OLA1	Q9NTK5	396 aa	Known RBP	11.96	□□□□□ -0.49
YBX3-216	ENST00000544622	ZSCAN32	Q9NX65	697 aa		11.96	□□□□□ -0.49
YBX3-216	ENST00000544622	MARCH2	Q9P0N8	246 aa		11.96	□□□□□ -0.49
YBX3-216	ENST00000544622	STOML2	Q9UJZ1	356 aa		11.96	□□□□□ -0.49
YBX3-216	ENST00000544622	AGO1	Q9UL18	857 aa	Known RBP	11.96	□□□□□ -0.49
YBX3-216	ENST00000544622	ZNF510	Q9Y2H8	683 aa		11.96	□□□□□ -0.49
YBX3-216	ENST00000544622	FHOD1	Q9Y613	1164 aa		11.96	□□□□□ -0.49
YBX3-216	ENST00000544622	GFRA2	O00451	464 aa		11.95	□□□□□ -0.5
YBX3-216	ENST00000544622	PIK3R2	O00459	728 aa		11.95	□□□□□ -0.5
YBX3-216	ENST00000544622	PAPSS1	O43252	624 aa	Predicted RBP	11.95	□□□□□ -0.5
YBX3-216	ENST00000544622	THAP12	O43422	761 aa		11.95	□□□□□ -0.5
YBX3-216	ENST00000544622	CACNG3	O60359	315 aa		11.95	□□□□□ -0.5
YBX3-216	ENST00000544622	ATG13	O75143	517 aa		11.95	□□□□□ -0.5
YBX3-216	ENST00000544622	FBXO21	O94952	628 aa		11.95	□□□□□ -0.5
YBX3-216	ENST00000544622	KAT7	O95251	611 aa		11.95	□□□□□ -0.5
YBX3-216	ENST00000544622	PNMA6A	P0CW24	399 aa	Predicted RBP	11.95	□□□□□ -0.5
YBX3-216	ENST00000544622	KIR2DL1	P43626	348 aa	Predicted RBP	11.95	□□□□□ -0.5
YBX3-216	ENST00000544622	ACADSB	P45954	432 aa		11.95	□□□□□ -0.5
YBX3-216	ENST00000544622	NRL	P54845	237 aa		11.95	□□□□□ -0.5
YBX3-216	ENST00000544622	EIF4EBP2	Q13542	120 aa	Predicted RBP	11.95	□□□□□ -0.5
YBX3-216	ENST00000544622	PPP2R5D	Q14738	602 aa		11.95	□□□□□ -0.5
YBX3-216	ENST00000544622	BTBD8	Q5XKL5	378 aa		11.95	□□□□□ -0.5
YBX3-216	ENST00000544622	ZC3H14	Q6PJT7	736 aa	Known RBP	11.95	□□□□□ -0.5
YBX3-216	ENST00000544622	SYT13	Q7L8C5	426 aa		11.95	□□□□□ -0.5
YBX3-216	ENST00000544622	SLC47A2	Q86VL8	602 aa		11.95	□□□□□ -0.5
YBX3-216	ENST00000544622	SFTPA1	Q8IWL2	248 aa		11.95	□□□□□ -0.5
YBX3-216	ENST00000544622	USP33	Q8TEY7	942 aa		11.95	□□□□□ -0.5
YBX3-216	ENST00000544622	DDX1	Q92499	740 aa	Known RBP	11.95	□□□□□ -0.5
YBX3-216	ENST00000544622	EDEM1	Q92611	657 aa		11.95	□□□□□ -0.5
YBX3-216	ENST00000544622	PNKP	Q96T60	521 aa		11.95	□□□□□ -0.5
YBX3-216	ENST00000544622	BPIFA3	Q9BQP9	254 aa		11.95	□□□□□ -0.5
YBX3-216	ENST00000544622	STK33	Q9BYT3	514 aa		11.95	□□□□□ -0.5
YBX3-216	ENST00000544622	VPS16	Q9H269	839 aa		11.95	□□□□□ -0.5

Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms