RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 H0Y626 953 aa9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 TNFRSF10BO14763 440 aa9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 SCAMP3O14828 347 aaKnown RBP9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 OPHN1O60890 802 aa9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 TRIM16O95361 564 aa9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 ZIC2O95409 532 aaPredicted RBP9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 TPM2P07951 284 aa9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 HNRNPLP14866 589 aaKnown RBP eCLIP9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 CDK11BP21127 795 aaKnown RBP9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 ITPKAP23677 461 aa9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 TBXAS1P24557 533 aaPredicted RBP9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 GNL1P36915 607 aaPredicted RBP9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 OPRD1P41143 372 aa9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 P2RY2P41231 377 aa9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 FAM193AP78312 1265 aa9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 KDSRQ06136 332 aa9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 GFPT1Q06210 699 aaPredicted RBP9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 EXOC3L4Q17RC7 722 aa9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 COL28A1Q2UY09 1125 aa9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 EMC10Q5UCC4 262 aa9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 SMYD5Q6GMV2 418 aa9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 SPOPLQ6IQ16 392 aa9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 GBP6Q6ZN66 633 aa9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 UNC93AQ86WB7 457 aa9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 OSTM1Q86WC4 334 aa9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 PROSER1Q86XN7 944 aa9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 SPATA2LQ8IUW3 424 aaPredicted RBP9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 TTC39CQ8N584 583 aa9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 TSPY26PQ9H489 355 aa9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 GTF3C4Q9UKN8 822 aa9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 CDH9Q9ULB4 789 aa9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 PCDHB9Q9Y5E1 797 aa9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 PLXND1Q9Y4D7 1925 aa9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 MYOFQ9NZM1 2061 aa9.2□□□□□ -0.94
CLSTN3-212ENST00000541770 LAMA1P25391 3075 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 TCRBV21S2A2A0A5A6 115 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 EIF4E1BA6NMX2 242 aaKnown RBP9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 SGK1O00141 431 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 NOL4O94818 638 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 CLSTN1O94985 981 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 ABL1P00519 1130 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 APODP05090 189 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 LMO2P25791 158 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 SLC6A11P48066 632 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 COPB1P53618 953 aaKnown RBP9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 CDH8P55286 799 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 TPM4P67936 248 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 MRPS21P82921 87 aaKnown RBP9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 GCNT1Q02742 428 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 RPL6Q02878 288 aaKnown RBP9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 INCA1Q0VD86 236 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 SCAPQ12770 1279 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 SEMA3BQ13214 749 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 CUL2Q13617 745 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 BYSLQ13895 437 aaKnown RBP9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 CCDC142Q17RM4 750 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 DUOXA1Q1HG43 343 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 INTS6LQ5JSJ4 861 aaKnown RBP9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 EOGTQ5NDL2 527 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 FAM171BQ6P995 826 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 SLC23A3Q6PIS1 610 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 TRIM65Q6PJ69 517 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 SCARA5Q6ZMJ2 495 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 APTXQ7Z2E3 356 aaKnown RBP9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 PDZD3Q86UT5 571 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 LUZP1Q86V48 1076 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 SFTPA1Q8IWL2 248 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 MINDY1Q8N5J2 469 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 OR2I1PQ8NGU4 316 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 OR6B3Q8NGW1 331 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 TATDN2Q93075 761 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 ELMO3Q96BJ8 720 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 ERLEC1Q96DZ1 483 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 TRMT2BQ96GJ1 504 aaKnown RBP9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 FAM81BQ96LP2 452 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 NT5C1BQ96P26 610 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 PNKPQ96T60 521 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 PKMYT1Q99640 499 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 MRPL45Q9BRJ2 306 aaKnown RBP9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 INTS2Q9H0H0 1204 aaKnown RBP9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 SDCBP2Q9H190 292 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 SNX25Q9H3E2 840 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 SMYD3Q9H7B4 428 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 TAB2Q9NYJ8 693 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 GCNT4Q9P109 453 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 SLC6A14Q9UN76 642 aa9.19□□□□□ -0.94
CLSTN3-212ENST00000541770 LGALS16A8MUM7 142 aa9.18□□□□□ -0.94
CLSTN3-212ENST00000541770 A8MXQ7 604 aa9.18□□□□□ -0.94
CLSTN3-212ENST00000541770 GOLGA6L19H0YKK7 550 aa9.18□□□□□ -0.94
CLSTN3-212ENST00000541770 LEFTY2O00292 366 aa9.18□□□□□ -0.94
CLSTN3-212ENST00000541770 AP5Z1O43299 807 aa9.18□□□□□ -0.94
CLSTN3-212ENST00000541770 HCRTO43612 131 aa9.18□□□□□ -0.94
CLSTN3-212ENST00000541770 CILPO75339 1184 aa9.18□□□□□ -0.94
CLSTN3-212ENST00000541770 KAT7O95251 611 aa9.18□□□□□ -0.94
CLSTN3-212ENST00000541770 CYP17A1P05093 508 aa9.18□□□□□ -0.94
CLSTN3-212ENST00000541770 ATP1A3P13637 1013 aa9.18□□□□□ -0.94
CLSTN3-212ENST00000541770 PON1P27169 355 aa9.18□□□□□ -0.94
CLSTN3-212ENST00000541770 DPP6P42658 865 aa9.18□□□□□ -0.94
CLSTN3-212ENST00000541770 YWHAEP62258 255 aaKnown RBP9.18□□□□□ -0.94
CLSTN3-212ENST00000541770 IFRD2Q12894 506 aaPredicted RBP9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms