RNA–Protein interactions for RNA: ENST00000541586.5

CCM2-218, Transcript of CCM2 scaffold protein, humanhuman

TSL 3 BASIC

Gene CCM2, Length 1,719 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCM2-218ENST00000541586 DPYSL4O14531 572 aa29.02■■■□□ 2.24
CCM2-218ENST00000541586 TRIM66O15016 1216 aa29.02■■■□□ 2.24
CCM2-218ENST00000541586 RPL10AP62906 217 aaKnown RBP29.02■■■□□ 2.24
CCM2-218ENST00000541586 MRPS5P82675 430 aaKnown RBP29.02■■■□□ 2.24
CCM2-218ENST00000541586 CCDC14Q49A88 953 aa29.02■■■□□ 2.24
CCM2-218ENST00000541586 TMEM184AQ6ZMB5 413 aa29.02■■■□□ 2.24
CCM2-218ENST00000541586 ARCQ7LC44 396 aa29.02■■■□□ 2.24
CCM2-218ENST00000541586 NDRG1Q92597 394 aaKnown RBP29.02■■■□□ 2.24
CCM2-218ENST00000541586 PABPC5Q96DU9 382 aaKnown RBP29.02■■■□□ 2.24
CCM2-218ENST00000541586 CFAP57Q96MR6 1250 aa29.02■■■□□ 2.24
CCM2-218ENST00000541586 NAP1L3Q99457 506 aaPredicted RBP29.02■■■□□ 2.24
CCM2-218ENST00000541586 PTPRDP23468 1912 aa29.01■■■□□ 2.23
CCM2-218ENST00000541586 MTCL1Q9Y4B5 1905 aaKnown RBP29.01■■■□□ 2.23
CCM2-218ENST00000541586 KRIT1O00522 736 aa29.01■■■□□ 2.23
CCM2-218ENST00000541586 ATF6P18850 670 aa29.01■■■□□ 2.23
CCM2-218ENST00000541586 EPHB3P54753 998 aa29.01■■■□□ 2.23
CCM2-218ENST00000541586 CLUL1Q15846 466 aa29.01■■■□□ 2.23
CCM2-218ENST00000541586 CTC1Q2NKJ3 1217 aa29.01■■■□□ 2.23
CCM2-218ENST00000541586 C15orf59Q2T9L4 293 aaPredicted RBP29.01■■■□□ 2.23
CCM2-218ENST00000541586 ATP13A4Q4VNC1 1196 aa29.01■■■□□ 2.23
CCM2-218ENST00000541586 EFHC1Q5JVL4 640 aa29.01■■■□□ 2.23
CCM2-218ENST00000541586 RARS2Q5T160 578 aaKnown RBP29.01■■■□□ 2.23
CCM2-218ENST00000541586 TXNRD3NBQ6F5E7 133 aa29.01■■■□□ 2.23
CCM2-218ENST00000541586 GPR161Q8N6U8 529 aaKnown RBP29.01■■■□□ 2.23
CCM2-218ENST00000541586 TBX10O75333 385 aa29■■■□□ 2.23
CCM2-218ENST00000541586 RNF8O76064 485 aa29■■■□□ 2.23
CCM2-218ENST00000541586 RHOXF2BP0C7M4 288 aa29■■■□□ 2.23
CCM2-218ENST00000541586 SLC25A11Q02978 314 aaKnown RBP29■■■□□ 2.23
CCM2-218ENST00000541586 TAF12Q16514 161 aa29■■■□□ 2.23
CCM2-218ENST00000541586 SH3PXD2AQ5TCZ1 1133 aa29■■■□□ 2.23
CCM2-218ENST00000541586 ANKRD54Q6NXT1 300 aa29■■■□□ 2.23
CCM2-218ENST00000541586 RHOXF2Q9BQY4 288 aa29■■■□□ 2.23
CCM2-218ENST00000541586 DZANK1Q9NVP4 752 aa29■■■□□ 2.23
CCM2-218ENST00000541586 CLEC1BQ9P126 229 aa29■■■□□ 2.23
CCM2-218ENST00000541586 MAGED2Q9UNF1 606 aaPredicted RBP29■■■□□ 2.23
CCM2-218ENST00000541586 FBXO21O94952 628 aa29■■■□□ 2.23
CCM2-218ENST00000541586 SDC4P31431 198 aa29■■■□□ 2.23
CCM2-218ENST00000541586 IFRD2Q12894 506 aaPredicted RBP29■■■□□ 2.23
CCM2-218ENST00000541586 ELMOD1Q8N336 334 aa29■■■□□ 2.23
CCM2-218ENST00000541586 ULBP1Q9BZM6 244 aa29■■■□□ 2.23
CCM2-218ENST00000541586 ANKZF1Q9H8Y5 726 aa29■■■□□ 2.23
CCM2-218ENST00000541586 LTBRP36941 435 aa28.99■■■□□ 2.23
CCM2-218ENST00000541586 MTMR3Q13615 1198 aa28.99■■■□□ 2.23
CCM2-218ENST00000541586 HADHQ16836 314 aaKnown RBP28.99■■■□□ 2.23
CCM2-218ENST00000541586 POLNQ7Z5Q5 900 aa28.99■■■□□ 2.23
CCM2-218ENST00000541586 ADAT2Q7Z6V5 191 aaKnown RBP28.99■■■□□ 2.23
CCM2-218ENST00000541586 SLC13A5Q86YT5 568 aaPredicted RBP28.99■■■□□ 2.23
CCM2-218ENST00000541586 EXD1Q8NHP7 514 aa28.99■■■□□ 2.23
CCM2-218ENST00000541586 C8orf48Q96LL4 319 aa28.99■■■□□ 2.23
CCM2-218ENST00000541586 ZNF512Q96ME7 567 aaPredicted RBP28.99■■■□□ 2.23
CCM2-218ENST00000541586 SFXN1Q9H9B4 322 aa28.99■■■□□ 2.23
CCM2-218ENST00000541586 PIDD1Q9HB75 910 aa28.99■■■□□ 2.23
CCM2-218ENST00000541586 PNPLA8Q9NP80 782 aa28.99■■■□□ 2.23
CCM2-218ENST00000541586 CNGB3Q9NQW8 809 aa28.99■■■□□ 2.23
CCM2-218ENST00000541586 ZDHHC7Q9NXF8 308 aa28.99■■■□□ 2.23
CCM2-218ENST00000541586 HSF2BPO75031 334 aa28.98■■■□□ 2.23
CCM2-218ENST00000541586 ZRANB2O95218 330 aaKnown RBP eCLIP28.98■■■□□ 2.23
CCM2-218ENST00000541586 IL1R2P27930 398 aa28.98■■■□□ 2.23
CCM2-218ENST00000541586 MIPP30301 263 aa28.98■■■□□ 2.23
CCM2-218ENST00000541586 PCK1P35558 622 aa28.98■■■□□ 2.23
CCM2-218ENST00000541586 ATP11AP98196 1134 aa28.98■■■□□ 2.23
CCM2-218ENST00000541586 PLD1Q13393 1074 aa28.98■■■□□ 2.23
CCM2-218ENST00000541586 VEPH1Q14D04 833 aa28.98■■■□□ 2.23
CCM2-218ENST00000541586 CDO1Q16878 200 aa28.98■■■□□ 2.23
CCM2-218ENST00000541586 RTL10Q7L3V2 364 aa28.98■■■□□ 2.23
CCM2-218ENST00000541586 FAM149B1Q96BN6 582 aa28.98■■■□□ 2.23
CCM2-218ENST00000541586 PRKD2Q9BZL6 878 aa28.98■■■□□ 2.23
CCM2-218ENST00000541586 KLHL11Q9NVR0 708 aa28.98■■■□□ 2.23
CCM2-218ENST00000541586 NR2E1Q9Y466 385 aa28.98■■■□□ 2.23
CCM2-218ENST00000541586 DAOAP59103 153 aa28.97■■■□□ 2.23
CCM2-218ENST00000541586 RAB6CQ53S08 254 aa28.97■■■□□ 2.23
CCM2-218ENST00000541586 SYCE2Q6PIF2 218 aa28.97■■■□□ 2.23
CCM2-218ENST00000541586 RAB6CQ9H0N0 254 aa28.97■■■□□ 2.23
CCM2-218ENST00000541586 ZWILCHQ9H900 591 aa28.97■■■□□ 2.23
CCM2-218ENST00000541586 DDX56Q9NY93 547 aaKnown RBP28.97■■■□□ 2.23
CCM2-218ENST00000541586 PCSK1NQ9UHG2 260 aa28.97■■■□□ 2.23
CCM2-218ENST00000541586 H3BQ06 376 aaPredicted RBP28.97■■■□□ 2.23
CCM2-218ENST00000541586 XYLBO75191 536 aa28.97■■■□□ 2.23
CCM2-218ENST00000541586 HNRNPA1P09651 372 aaKnown RBP eCLIP28.97■■■□□ 2.23
CCM2-218ENST00000541586 PTPN9P43378 593 aa28.97■■■□□ 2.23
CCM2-218ENST00000541586 LLGL1Q15334 1064 aa28.97■■■□□ 2.23
CCM2-218ENST00000541586 ZFYVE27Q5T4F4 411 aa28.97■■■□□ 2.23
CCM2-218ENST00000541586 DENND5BQ6ZUT9 1274 aa28.97■■■□□ 2.23
CCM2-218ENST00000541586 DNAJB7Q7Z6W7 309 aaPredicted RBP28.97■■■□□ 2.23
CCM2-218ENST00000541586 CCDC50Q8IVM0 306 aa28.97■■■□□ 2.23
CCM2-218ENST00000541586 MAFAQ8NHW3 353 aaPredicted RBP28.97■■■□□ 2.23
CCM2-218ENST00000541586 KRT12Q99456 494 aa28.97■■■□□ 2.23
CCM2-218ENST00000541586 DDX23Q9BUQ8 820 aaKnown RBP28.97■■■□□ 2.23
CCM2-218ENST00000541586 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP28.97■■■□□ 2.239e-7■■■■□ 19.3
CCM2-218ENST00000541586 USP18Q9UMW8 372 aa28.97■■■□□ 2.23
CCM2-218ENST00000541586 CCDC188H7C350 402 aa28.96■■■□□ 2.23
CCM2-218ENST00000541586 ZBED1O96006 694 aa28.96■■■□□ 2.23
CCM2-218ENST00000541586 KRT1P04264 644 aa28.96■■■□□ 2.23
CCM2-218ENST00000541586 GLI1P08151 1106 aa28.96■■■□□ 2.23
CCM2-218ENST00000541586 KRT7P08729 469 aa28.96■■■□□ 2.23
CCM2-218ENST00000541586 USP17L7P0C7H9 530 aa28.96■■■□□ 2.23
CCM2-218ENST00000541586 HOXB8P17481 243 aaPredicted RBP28.96■■■□□ 2.23
CCM2-218ENST00000541586 YWHAZP63104 245 aaKnown RBP28.96■■■□□ 2.23
CCM2-218ENST00000541586 RCOR2Q8IZ40 523 aa28.96■■■□□ 2.23
CCM2-218ENST00000541586 NUP93Q8N1F7 819 aa28.96■■■□□ 2.23
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms