RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 ADGRD1Q6QNK2 874 aa14.31□□□□□ -0.12
RTN3-210ENST00000540798 C4orf22Q6V702 233 aa14.31□□□□□ -0.12
RTN3-210ENST00000540798 PPP1R21Q6ZMI0 780 aa14.31□□□□□ -0.12
RTN3-210ENST00000540798 ARHGEF18Q6ZSZ5 1173 aa14.31□□□□□ -0.12
RTN3-210ENST00000540798 CLEC20AQ6ZU45 233 aa14.31□□□□□ -0.12
RTN3-210ENST00000540798 SGSM3Q96HU1 749 aa14.31□□□□□ -0.12
RTN3-210ENST00000540798 CABS1Q96KC9 395 aa14.31□□□□□ -0.12
RTN3-210ENST00000540798 CSPG4P5Q96PW8 444 aa14.31□□□□□ -0.12
RTN3-210ENST00000540798 SLC2A13Q96QE2 648 aa14.31□□□□□ -0.12
RTN3-210ENST00000540798 KCNK9Q9NPC2 374 aa14.31□□□□□ -0.12
RTN3-210ENST00000540798 FZD10Q9ULW2 581 aa14.31□□□□□ -0.12
RTN3-210ENST00000540798 KCNN4O15554 427 aa14.31□□□□□ -0.12
RTN3-210ENST00000540798 BEST1O76090 585 aa14.31□□□□□ -0.12
RTN3-210ENST00000540798 RPLP2P05387 115 aaKnown RBP14.31□□□□□ -0.12
RTN3-210ENST00000540798 SSTR1P30872 391 aa14.31□□□□□ -0.12
RTN3-210ENST00000540798 MRPS5P82675 430 aaKnown RBP14.31□□□□□ -0.12
RTN3-210ENST00000540798 SREBF2Q12772 1141 aa14.31□□□□□ -0.12
RTN3-210ENST00000540798 SLC10A2Q12908 348 aaPredicted RBP14.31□□□□□ -0.12
RTN3-210ENST00000540798 PKN2Q16513 984 aaKnown RBP14.31□□□□□ -0.12
RTN3-210ENST00000540798 LACTB2Q53H82 288 aaPredicted RBP14.31□□□□□ -0.12
RTN3-210ENST00000540798 TMEM86AQ8N2M4 240 aa14.31□□□□□ -0.12
RTN3-210ENST00000540798 OTUD6BQ8N6M0 293 aa14.31□□□□□ -0.12
RTN3-210ENST00000540798 PPM1EQ8WY54 764 aa14.31□□□□□ -0.12
RTN3-210ENST00000540798 MAGEB18Q96M61 343 aa14.31□□□□□ -0.12
RTN3-210ENST00000540798 OSBPL7Q9BZF2 842 aa14.31□□□□□ -0.12
RTN3-210ENST00000540798 FAM47DPA6NHR8 397 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 ADAMTS4O75173 837 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 ADIGQ0VDE8 80 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 KLHL38Q2WGJ6 581 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 TTC31Q49AM3 519 aaPredicted RBP14.3□□□□□ -0.12
RTN3-210ENST00000540798 CXCL17Q6UXB2 119 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 RSPH3Q86UC2 560 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 IGDCC3Q8IVU1 814 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 CDKL3Q8IVW4 592 aaPredicted RBP14.3□□□□□ -0.12
RTN3-210ENST00000540798 AGGF1Q8N302 714 aaeCLIP14.3□□□□□ -0.12
RTN3-210ENST00000540798 CCDC197Q8NCU1 140 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 CCT6BQ92526 530 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 QKIQ96PU8 341 aaKnown RBP eCLIP14.3□□□□□ -0.121e-6■■■□□ 15.5
RTN3-210ENST00000540798 NPY6RQ99463 290 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 NSRP1Q9H0G5 558 aaKnown RBP14.3□□□□□ -0.12
RTN3-210ENST00000540798 PNPLA8Q9NP80 782 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 CRTAC1Q9NQ79 661 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 MIOSQ9NXC5 875 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 GIT1Q9Y2X7 761 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 HEY1Q9Y5J3 304 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 PATJQ8NI35 1801 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 POC1B-GALNT4F8VUJ3 575 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 GCATO75600 419 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 ASMTLO95671 621 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 MLH1P40692 756 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 SLC45A4Q5BKX6 768 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 NCBP2-AS2Q69YL0 99 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 C3orf62Q6ZUJ4 267 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 DEFB106AQ8N104 65 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 MGARPQ8TDB4 240 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 DCAKDQ8WVC6 231 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 SENP8Q96LD8 212 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 OLFM3Q96PB7 478 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 MAGEB5Q9BZ81 275 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 DHX35Q9H5Z1 703 aaKnown RBP14.3□□□□□ -0.12
RTN3-210ENST00000540798 SMG5Q9UPR3 1016 aaKnown RBP14.3□□□□□ -0.12
RTN3-210ENST00000540798 TLL2Q9Y6L7 1015 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 CLDN5O00501 218 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 CA12O43570 354 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 TYROBPO43914 113 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 C1QAP02745 245 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 NOS2P35228 1153 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 WDR4P57081 412 aaKnown RBP14.3□□□□□ -0.12
RTN3-210ENST00000540798 PPP6R3Q5H9R7 873 aaPredicted RBP14.3□□□□□ -0.12
RTN3-210ENST00000540798 MFSD14CQ5VZR4 134 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 ANKRD42Q8N9B4 389 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 FBF1Q8TES7 1133 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 TRABDQ9H4I3 376 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 ETNK2Q9NVF9 386 aa14.3□□□□□ -0.12
RTN3-210ENST00000540798 TDRD15B5MCY1 1934 aaKnown RBP14.29□□□□□ -0.12
RTN3-210ENST00000540798 SNX3O60493 162 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 DGKIO75912 1065 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 ZBED1O96006 694 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 ACAT1P24752 427 aaKnown RBP14.29□□□□□ -0.12
RTN3-210ENST00000540798 MAGEA3P43357 314 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 LHX1P48742 406 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 AFF1P51825 1210 aaKnown RBP14.29□□□□□ -0.12
RTN3-210ENST00000540798 SATB1Q01826 763 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 GBE1Q04446 702 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 EFTUD2Q15029 972 aaKnown RBP eCLIP14.29□□□□□ -0.123e-9■■■■□ 23.3
RTN3-210ENST00000540798 BBS9Q3SYG4 887 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 RAB41Q5JT25 222 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 AGMOQ6ZNB7 445 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 HACE1Q8IYU2 909 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 ZNF784Q8NCA9 323 aaPredicted RBP14.29□□□□□ -0.12
RTN3-210ENST00000540798 MCUQ8NE86 351 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 KDM4CQ9H3R0 1056 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 NKIRAS1Q9NYS0 192 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 GABRQQ9UN88 632 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 ARL5CA6NH57 179 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 TCP11X1B4DZS4 312 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 SEPT4O43236 478 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 SPAG6O75602 509 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 PGK1P00558 417 aa14.29□□□□□ -0.12
RTN3-210ENST00000540798 THP07101 528 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 78 ms