RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 MAGEA11P43364 429 aa8.77□□□□□ -1.01
CD44-232ENST00000531118 IL9RQ01113 521 aa8.77□□□□□ -1.01
CD44-232ENST00000531118 TARDBPQ13148 414 aaKnown RBP eCLIP8.77□□□□□ -1.01
CD44-232ENST00000531118 SF3A1Q15459 793 aaKnown RBP8.77□□□□□ -1.01
CD44-232ENST00000531118 KIF19Q2TAC6 998 aa8.77□□□□□ -1.01
CD44-232ENST00000531118 COLEC12Q5KU26 742 aa8.77□□□□□ -1.01
CD44-232ENST00000531118 BTBD8Q5XKL5 378 aa8.77□□□□□ -1.01
CD44-232ENST00000531118 RINT1Q6NUQ1 792 aa8.77□□□□□ -1.01
CD44-232ENST00000531118 LAYNQ6UX15 382 aa8.77□□□□□ -1.01
CD44-232ENST00000531118 C1orf186Q6ZWK4 172 aa8.77□□□□□ -1.01
CD44-232ENST00000531118 OSTM1Q86WC4 334 aa8.77□□□□□ -1.01
CD44-232ENST00000531118 SPATA2LQ8IUW3 424 aaPredicted RBP8.77□□□□□ -1.01
CD44-232ENST00000531118 SNX19Q92543 992 aa8.77□□□□□ -1.01
CD44-232ENST00000531118 WASF1Q92558 559 aa8.77□□□□□ -1.01
CD44-232ENST00000531118 OTUB2Q96DC9 234 aa8.77□□□□□ -1.01
CD44-232ENST00000531118 ACBD6Q9BR61 282 aa8.77□□□□□ -1.01
CD44-232ENST00000531118 TIPINQ9BVW5 301 aa8.77□□□□□ -1.01
CD44-232ENST00000531118 TTLL2Q9BWV7 592 aa8.77□□□□□ -1.01
CD44-232ENST00000531118 RNF38Q9H0F5 515 aa8.77□□□□□ -1.01
CD44-232ENST00000531118 CPNE5Q9HCH3 593 aa8.77□□□□□ -1.01
CD44-232ENST00000531118 DDX43Q9NXZ2 648 aaKnown RBP8.77□□□□□ -1.01
CD44-232ENST00000531118 TBC1D14Q9P2M4 693 aa8.77□□□□□ -1.01
CD44-232ENST00000531118 CPSF3Q9UKF6 684 aaKnown RBP8.77□□□□□ -1.01
CD44-232ENST00000531118 FLNCQ14315 2725 aa8.77□□□□□ -1.01
CD44-232ENST00000531118 ZNF840PA6NDX5 716 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 SFI1A8K8P3 1242 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 METTL12A8MUP2 240 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 KCNJ18B7U540 433 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 H0Y8X5 98 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 CBX4O00257 560 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 ENC1O14682 589 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 PAPSS1O43252 624 aaPredicted RBP8.76□□□□□ -1.01
CD44-232ENST00000531118 PIGRP01833 764 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 CDC25AP30304 524 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 GRIA4P48058 902 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 CSNK1EP49674 416 aaKnown RBP8.76□□□□□ -1.01
CD44-232ENST00000531118 ACADVLP49748 655 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 AFF3P51826 1226 aaKnown RBP8.76□□□□□ -1.01
CD44-232ENST00000531118 SMTNP53814 917 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 UCNP55089 124 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 NCKAP1LP55160 1127 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 MYL7Q01449 175 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 RAD51AP2Q09MP3 1159 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 DNAJC3Q13217 504 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 ORC2Q13416 577 aaPredicted RBP8.76□□□□□ -1.01
CD44-232ENST00000531118 FUT11Q495W5 492 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 ARHGAP40Q5TG30 622 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 SDE2Q6IQ49 451 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 FBXL19Q6PCT2 694 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 DENND5BQ6ZUT9 1274 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 USP49Q70CQ1 688 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 SCFD1Q8WVM8 642 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 IGSF8Q969P0 613 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 MYLPFQ96A32 169 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 MED8Q96G25 268 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 SPATA17Q96L03 361 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 NTPCRQ9BSD7 190 aaKnown RBP8.76□□□□□ -1.01
CD44-232ENST00000531118 MSTO1Q9BUK6 570 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 DNAJC17Q9NVM6 304 aaKnown RBP8.76□□□□□ -1.01
CD44-232ENST00000531118 DPP3Q9NY33 737 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 NXF1Q9UBU9 619 aaKnown RBP8.76□□□□□ -1.01
CD44-232ENST00000531118 LRWD1Q9UFC0 647 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 GTF3C4Q9UKN8 822 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 PCDHB6Q9Y5E3 794 aa8.76□□□□□ -1.01
CD44-232ENST00000531118 NBASA2RRP1 2371 aa8.75□□□□□ -1.01
CD44-232ENST00000531118 PRRT4C9JH25 899 aa8.75□□□□□ -1.01
CD44-232ENST00000531118 GFRA2O00451 464 aa8.75□□□□□ -1.01
CD44-232ENST00000531118 LAD1O00515 517 aa8.75□□□□□ -1.01
CD44-232ENST00000531118 CACNG3O60359 315 aa8.75□□□□□ -1.01
CD44-232ENST00000531118 IGLV3-19P01714 112 aa8.75□□□□□ -1.01
CD44-232ENST00000531118 KRT10P13645 584 aa8.75□□□□□ -1.01
CD44-232ENST00000531118 FDPSP14324 419 aaKnown RBP8.75□□□□□ -1.01
CD44-232ENST00000531118 SOX11P35716 441 aa8.75□□□□□ -1.01
CD44-232ENST00000531118 GRIK1P39086 918 aa8.75□□□□□ -1.01
CD44-232ENST00000531118 PNPLA4P41247 253 aa8.75□□□□□ -1.01
CD44-232ENST00000531118 PCBP4P57723 403 aaKnown RBP8.75□□□□□ -1.01
CD44-232ENST00000531118 STARD3Q14849 445 aa8.75□□□□□ -1.01
CD44-232ENST00000531118 TEAD4Q15561 434 aa8.75□□□□□ -1.01
CD44-232ENST00000531118 ANO4Q32M45 955 aa8.75□□□□□ -1.01
CD44-232ENST00000531118 BROXQ5VW32 411 aa8.75□□□□□ -1.01
CD44-232ENST00000531118 SLC39A4Q6P5W5 647 aa8.75□□□□□ -1.01
CD44-232ENST00000531118 C4orf50Q6ZRC1 276 aa8.75□□□□□ -1.01
CD44-232ENST00000531118 KCNK18Q7Z418 384 aa8.75□□□□□ -1.01
CD44-232ENST00000531118 CACUL1Q86Y37 369 aa8.75□□□□□ -1.01
CD44-232ENST00000531118 BBS7Q8IWZ6 715 aa8.75□□□□□ -1.01
CD44-232ENST00000531118 ADGRF2Q8IZF7 708 aa8.75□□□□□ -1.01
CD44-232ENST00000531118 TMEM86AQ8N2M4 240 aa8.75□□□□□ -1.01
CD44-232ENST00000531118 ZNF248Q8NDW4 579 aa8.75□□□□□ -1.01
CD44-232ENST00000531118 KCNN1Q92952 543 aa8.75□□□□□ -1.01
CD44-232ENST00000531118 NAF1Q96HR8 494 aaKnown RBP8.75□□□□□ -1.01
CD44-232ENST00000531118 CNDP2Q96KP4 475 aaKnown RBP8.75□□□□□ -1.01
CD44-232ENST00000531118 TRIM9Q9C026 710 aa8.75□□□□□ -1.01
CD44-232ENST00000531118 MKRN2Q9H000 416 aaKnown RBP8.75□□□□□ -1.01
CD44-232ENST00000531118 ASB7Q9H672 318 aa8.75□□□□□ -1.01
CD44-232ENST00000531118 SPHK2Q9NRA0 654 aa8.75□□□□□ -1.01
CD44-232ENST00000531118 IL17BQ9UHF5 180 aa8.75□□□□□ -1.01
CD44-232ENST00000531118 DNM3Q9UQ16 869 aa8.75□□□□□ -1.01
CD44-232ENST00000531118 ANKRD6Q9Y2G4 727 aa8.75□□□□□ -1.01
CD44-232ENST00000531118 CYP46A1Q9Y6A2 500 aa8.75□□□□□ -1.01
CD44-232ENST00000531118 USP9YO00507 2555 aaPredicted RBP8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms