RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 SEC24AO95486 1093 aa21.9■■□□□ 1.1
VPS28-208ENST00000527797 KRT10P13645 584 aa21.9■■□□□ 1.1
VPS28-208ENST00000527797 CA8P35219 290 aa21.9■■□□□ 1.1
VPS28-208ENST00000527797 CDH6P55285 790 aa21.9■■□□□ 1.1
VPS28-208ENST00000527797 KLF1Q13351 362 aaPredicted RBP21.9■■□□□ 1.1
VPS28-208ENST00000527797 SIX1Q15475 284 aaPredicted RBP21.9■■□□□ 1.1
VPS28-208ENST00000527797 C9orf50Q5SZB4 431 aa21.9■■□□□ 1.1
VPS28-208ENST00000527797 KAZNQ674X7 775 aa21.9■■□□□ 1.1
VPS28-208ENST00000527797 TMC7Q7Z402 723 aa21.9■■□□□ 1.1
VPS28-208ENST00000527797 FAM131BQ86XD5 332 aa21.9■■□□□ 1.1
VPS28-208ENST00000527797 GIPC2Q8TF65 315 aa21.9■■□□□ 1.1
VPS28-208ENST00000527797 FBXO32Q969P5 355 aa21.9■■□□□ 1.1
VPS28-208ENST00000527797 HERPUD2Q9BSE4 406 aa21.9■■□□□ 1.1
VPS28-208ENST00000527797 FAM204AQ9H8W3 233 aa21.9■■□□□ 1.1
VPS28-208ENST00000527797 CYP4F11Q9HBI6 524 aa21.9■■□□□ 1.1
VPS28-208ENST00000527797 LINC01553A4QN01 128 aa21.89■■□□□ 1.09
VPS28-208ENST00000527797 TEX28O15482 410 aa21.89■■□□□ 1.09
VPS28-208ENST00000527797 PHF2O75151 1096 aa21.89■■□□□ 1.09
VPS28-208ENST00000527797 ATF6P18850 670 aa21.89■■□□□ 1.09
VPS28-208ENST00000527797 GBP1P32455 592 aa21.89■■□□□ 1.09
VPS28-208ENST00000527797 ELF1P32519 619 aa21.89■■□□□ 1.09
VPS28-208ENST00000527797 MAGEA10P43363 369 aaPredicted RBP21.89■■□□□ 1.09
VPS28-208ENST00000527797 ARSEP51690 589 aa21.89■■□□□ 1.09
VPS28-208ENST00000527797 TAZQ16635 292 aa21.89■■□□□ 1.09
VPS28-208ENST00000527797 SND1Q7KZF4 910 aaKnown RBP eCLIP21.89■■□□□ 1.09
VPS28-208ENST00000527797 CCDC26Q8TAB7 109 aa21.89■■□□□ 1.09
VPS28-208ENST00000527797 ADAM32Q8TC27 787 aa21.89■■□□□ 1.09
VPS28-208ENST00000527797 MAGOHBQ96A72 148 aaKnown RBP21.89■■□□□ 1.09
VPS28-208ENST00000527797 CALN1Q9BXU9 219 aa21.89■■□□□ 1.09
VPS28-208ENST00000527797 NMUR1Q9HB89 426 aa21.89■■□□□ 1.09
VPS28-208ENST00000527797 PIGVQ9NUD9 493 aa21.89■■□□□ 1.09
VPS28-208ENST00000527797 GPATCH2LQ9NWQ4 482 aa21.89■■□□□ 1.09
VPS28-208ENST00000527797 DDIT4Q9NX09 232 aa21.89■■□□□ 1.09
VPS28-208ENST00000527797 PATJQ8NI35 1801 aa21.89■■□□□ 1.09
VPS28-208ENST00000527797 TARSL2A2RTX5 802 aaKnown RBP21.88■■□□□ 1.09
VPS28-208ENST00000527797 CXCL14O95715 111 aa21.88■■□□□ 1.09
VPS28-208ENST00000527797 CD48P09326 243 aa21.88■■□□□ 1.09
VPS28-208ENST00000527797 CHRNA3P32297 505 aa21.88■■□□□ 1.09
VPS28-208ENST00000527797 CYP1B1Q16678 543 aa21.88■■□□□ 1.09
VPS28-208ENST00000527797 ZC3H12AQ5D1E8 599 aaKnown RBP21.88■■□□□ 1.09
VPS28-208ENST00000527797 PSTKQ8IV42 348 aaKnown RBP21.88■■□□□ 1.09
VPS28-208ENST00000527797 CCDC185Q8N715 623 aa21.88■■□□□ 1.09
VPS28-208ENST00000527797 DQX1Q8TE96 717 aaKnown RBP21.88■■□□□ 1.09
VPS28-208ENST00000527797 RNF139Q8WU17 664 aa21.88■■□□□ 1.09
VPS28-208ENST00000527797 PARD6BQ9BYG5 372 aa21.88■■□□□ 1.09
VPS28-208ENST00000527797 HOMER3Q9NSC5 361 aa21.88■■□□□ 1.09
VPS28-208ENST00000527797 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP21.88■■□□□ 1.092e-7■■■■□ 26
VPS28-208ENST00000527797 GMIPQ9P107 970 aa21.88■■□□□ 1.09
VPS28-208ENST00000527797 FZD10Q9ULW2 581 aa21.88■■□□□ 1.09
VPS28-208ENST00000527797 AP4E1Q9UPM8 1137 aa21.88■■□□□ 1.09
VPS28-208ENST00000527797 ALDH1A3P47895 512 aa21.88■■□□□ 1.09
VPS28-208ENST00000527797 PSEN1P49768 467 aa21.88■■□□□ 1.09
VPS28-208ENST00000527797 AIF1P55008 147 aa21.88■■□□□ 1.09
VPS28-208ENST00000527797 TAF10Q12962 218 aa21.88■■□□□ 1.09
VPS28-208ENST00000527797 MTMR3Q13615 1198 aa21.88■■□□□ 1.09
VPS28-208ENST00000527797 SHHQ15465 462 aa21.88■■□□□ 1.09
VPS28-208ENST00000527797 MAATS1Q7Z4T9 603 aa21.88■■□□□ 1.09
VPS28-208ENST00000527797 TAC4Q86UU9 113 aa21.88■■□□□ 1.09
VPS28-208ENST00000527797 VSIG1Q86XK7 387 aa21.88■■□□□ 1.09
VPS28-208ENST00000527797 C12orf50Q8NA57 414 aaPredicted RBP21.88■■□□□ 1.09
VPS28-208ENST00000527797 RUNDC3BQ96NL0 473 aa21.88■■□□□ 1.09
VPS28-208ENST00000527797 MAK16Q9BXY0 300 aaKnown RBP21.88■■□□□ 1.09
VPS28-208ENST00000527797 PCDH18Q9HCL0 1135 aa21.88■■□□□ 1.09
VPS28-208ENST00000527797 TLR8Q9NR97 1041 aaKnown RBP21.88■■□□□ 1.09
VPS28-208ENST00000527797 SLTMQ9NWH9 1034 aaKnown RBP eCLIP21.88■■□□□ 1.09
VPS28-208ENST00000527797 KIAA1671Q9BY89 1806 aa21.87■■□□□ 1.09
VPS28-208ENST00000527797 PRRG1O14668 218 aa21.87■■□□□ 1.09
VPS28-208ENST00000527797 TUBBP07437 444 aa21.87■■□□□ 1.09
VPS28-208ENST00000527797 CNPP09543 421 aaKnown RBP21.87■■□□□ 1.09
VPS28-208ENST00000527797 PGFP49763 221 aa21.87■■□□□ 1.09
VPS28-208ENST00000527797 MRPS25P82663 173 aaKnown RBP21.87■■□□□ 1.09
VPS28-208ENST00000527797 DPYSL3Q14195 570 aa21.87■■□□□ 1.09
VPS28-208ENST00000527797 DPYSL2Q16555 572 aa21.87■■□□□ 1.09
VPS28-208ENST00000527797 CA9Q16790 459 aa21.87■■□□□ 1.09
VPS28-208ENST00000527797 RFX6Q8HWS3 928 aa21.87■■□□□ 1.09
VPS28-208ENST00000527797 TCEAL8Q8IYN2 117 aa21.87■■□□□ 1.09
VPS28-208ENST00000527797 FAM71BQ8TC56 605 aa21.87■■□□□ 1.09
VPS28-208ENST00000527797 C1orf54Q8WWF1 131 aa21.87■■□□□ 1.09
VPS28-208ENST00000527797 TTLL2Q9BWV7 592 aa21.87■■□□□ 1.09
VPS28-208ENST00000527797 DHX35Q9H5Z1 703 aaKnown RBP21.87■■□□□ 1.09
VPS28-208ENST00000527797 LRRC19Q9H756 370 aa21.87■■□□□ 1.09
VPS28-208ENST00000527797 WDR6Q9NNW5 1121 aaKnown RBP21.87■■□□□ 1.09
VPS28-208ENST00000527797 ALG13Q9NP73 1137 aaKnown RBP21.87■■□□□ 1.09
VPS28-208ENST00000527797 MAGED2Q9UNF1 606 aaPredicted RBP21.87■■□□□ 1.09
VPS28-208ENST00000527797 YIPF1Q9Y548 306 aa21.87■■□□□ 1.09
VPS28-208ENST00000527797 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP21.86■■□□□ 1.09
VPS28-208ENST00000527797 RAD51CO43502 376 aa21.86■■□□□ 1.09
VPS28-208ENST00000527797 CSH1P0DML2 217 aa21.86■■□□□ 1.09
VPS28-208ENST00000527797 CSH2P0DML3 217 aa21.86■■□□□ 1.09
VPS28-208ENST00000527797 L1CAMP32004 1257 aa21.86■■□□□ 1.09
VPS28-208ENST00000527797 CXCR3P49682 368 aa21.86■■□□□ 1.09
VPS28-208ENST00000527797 ADCY2Q08462 1091 aa21.86■■□□□ 1.09
VPS28-208ENST00000527797 ARL13BQ3SXY8 428 aa21.86■■□□□ 1.09
VPS28-208ENST00000527797 NTAN1Q96AB6 310 aa21.86■■□□□ 1.09
VPS28-208ENST00000527797 TCF25Q9BQ70 676 aa21.86■■□□□ 1.09
VPS28-208ENST00000527797 C17orf80Q9BSJ5 609 aa21.86■■□□□ 1.09
VPS28-208ENST00000527797 DCLK3Q9C098 648 aa21.86■■□□□ 1.09
VPS28-208ENST00000527797 SMOC2Q9H3U7 446 aa21.86■■□□□ 1.09
VPS28-208ENST00000527797 TMEM51Q9NW97 253 aa21.86■■□□□ 1.09
VPS28-208ENST00000527797 OSER1Q9NX31 292 aa21.86■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 69.4 ms