RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 SEC23BQ15437 767 aa2.81□□□□□ -1.96
CD44-216ENST00000525293 TMEM63BQ5T3F8 832 aa2.81□□□□□ -1.96
CD44-216ENST00000525293 CCDC181Q5TID7 509 aa2.81□□□□□ -1.96
CD44-216ENST00000525293 MANEALQ5VSG8 457 aa2.81□□□□□ -1.96
CD44-216ENST00000525293 ZNF280DQ6N043 979 aa2.81□□□□□ -1.96
CD44-216ENST00000525293 SHC4Q6S5L8 630 aa2.81□□□□□ -1.96
CD44-216ENST00000525293 VSTM1Q6UX27 236 aa2.81□□□□□ -1.96
CD44-216ENST00000525293 USP49Q70CQ1 688 aa2.81□□□□□ -1.96
CD44-216ENST00000525293 C11orf96Q7Z7L8 435 aa2.81□□□□□ -1.96
CD44-216ENST00000525293 EGFL6Q8IUX8 553 aa2.81□□□□□ -1.96
CD44-216ENST00000525293 LIX1LQ8IVB5 337 aa2.81□□□□□ -1.96
CD44-216ENST00000525293 SMC5Q8IY18 1101 aa2.81□□□□□ -1.96
CD44-216ENST00000525293 C16orf71Q8IYS4 520 aaPredicted RBP2.81□□□□□ -1.96
CD44-216ENST00000525293 C12orf76Q8N812 135 aaPredicted RBP2.81□□□□□ -1.96
CD44-216ENST00000525293 C9orf106Q8NAJ2 232 aa2.81□□□□□ -1.96
CD44-216ENST00000525293 NGDNQ8NEJ9 315 aaKnown RBP2.81□□□□□ -1.96
CD44-216ENST00000525293 TTC8Q8TAM2 541 aa2.81□□□□□ -1.96
CD44-216ENST00000525293 ZNF398Q8TD17 642 aa2.81□□□□□ -1.96
CD44-216ENST00000525293 CUL5Q93034 780 aa2.81□□□□□ -1.96
CD44-216ENST00000525293 VPS50Q96JG6 964 aa2.81□□□□□ -1.96
CD44-216ENST00000525293 ZNF668Q96K58 619 aaPredicted RBP2.81□□□□□ -1.96
CD44-216ENST00000525293 SNX22Q96L94 193 aa2.81□□□□□ -1.96
CD44-216ENST00000525293 TSPAN18Q96SJ8 248 aa2.81□□□□□ -1.96
CD44-216ENST00000525293 TMEM79Q9BSE2 394 aa2.81□□□□□ -1.96
CD44-216ENST00000525293 USP29Q9HBJ7 922 aa2.81□□□□□ -1.96
CD44-216ENST00000525293 METTL14Q9HCE5 456 aaKnown RBP2.81□□□□□ -1.96
CD44-216ENST00000525293 DNAJB11Q9UBS4 358 aa2.81□□□□□ -1.96
CD44-216ENST00000525293 ZNF212Q9UDV6 495 aa2.81□□□□□ -1.96
CD44-216ENST00000525293 STEAP1Q9UHE8 339 aa2.81□□□□□ -1.96
CD44-216ENST00000525293 HPSEQ9Y251 543 aa2.81□□□□□ -1.96
CD44-216ENST00000525293 SLC27A6Q9Y2P4 619 aa2.81□□□□□ -1.96
CD44-216ENST00000525293 AFG3L2Q9Y4W6 797 aa2.81□□□□□ -1.96
CD44-216ENST00000525293 RPGRIP1LQ68CZ1 1315 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 A8MVJ9 347 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 FYB1O15117 783 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 CA12O43570 354 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 FGBP02675 491 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 RHCEP18577 417 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 ADRA1DP25100 572 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 CCT4P50991 539 aaKnown RBP2.8□□□□□ -1.96
CD44-216ENST00000525293 EIF4A1P60842 406 aaKnown RBP2.8□□□□□ -1.96
CD44-216ENST00000525293 RHDQ02161 417 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 ZNF91Q05481 1191 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 SLC14A1Q13336 389 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 SEMA5AQ13591 1074 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 GALEQ14376 348 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 ZNF260Q3ZCT1 412 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 CC2D1BQ5T0F9 858 aaKnown RBP2.8□□□□□ -1.96
CD44-216ENST00000525293 TMTC4Q5T4D3 741 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 RRAGBQ5VZM2 374 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 MZT2AQ6P582 158 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 CASC1Q6TDU7 716 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 RNF44Q7L0R7 432 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 WDR75Q8IWA0 830 aaKnown RBP2.8□□□□□ -1.96
CD44-216ENST00000525293 FSTL5Q8N475 847 aaPredicted RBP2.8□□□□□ -1.96
CD44-216ENST00000525293 PNPLA1Q8N8W4 532 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 FAM71DQ8N9W8 422 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 C16orf52Q8NHV5 167 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 GADD45GIP1Q8TAE8 222 aaPredicted RBP2.8□□□□□ -1.96
CD44-216ENST00000525293 COQ8BQ96D53 544 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 EDC3Q96F86 508 aaKnown RBP2.8□□□□□ -1.96
CD44-216ENST00000525293 HMCESQ96FZ2 354 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 MSLNLQ96KJ4 702 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 SIGLEC11Q96RL6 698 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 STRBPQ96SI9 672 aaKnown RBP2.8□□□□□ -1.96
CD44-216ENST00000525293 AS3MTQ9HBK9 375 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 GAR1Q9NY12 217 aaKnown RBP2.8□□□□□ -1.96
CD44-216ENST00000525293 CHPF2Q9P2E5 772 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 PI4KBQ9UBF8 816 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 NRBP1Q9UHY1 535 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 CAPN11Q9UMQ6 739 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 SNX13Q9Y5W8 968 aa2.8□□□□□ -1.96
CD44-216ENST00000525293 PROB1E7EW31 1015 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 SOCS2O14508 198 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 PRAMEF2O60811 474 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 WDHD1O75717 1129 aaPredicted RBP2.79□□□□□ -1.96
CD44-216ENST00000525293 ANXA2P07355 339 aaKnown RBP2.79□□□□□ -1.96
CD44-216ENST00000525293 TMEM225BP0DP42 221 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 CYP19A1P11511 503 aaPredicted RBP2.79□□□□□ -1.96
CD44-216ENST00000525293 ITGB6P18564 788 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 ATF3P18847 181 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 RBL1P28749 1068 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 COPAP53621 1224 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 GPC5P78333 572 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 IRX3P78415 501 aaPredicted RBP2.79□□□□□ -1.96
CD44-216ENST00000525293 HTRA4P83105 476 aaPredicted RBP2.79□□□□□ -1.96
CD44-216ENST00000525293 TXNL4AP83876 142 aaKnown RBP2.79□□□□□ -1.96
CD44-216ENST00000525293 RBMS2Q15434 407 aaKnown RBP2.79□□□□□ -1.96
CD44-216ENST00000525293 ST3GAL2Q16842 350 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 C10orf25Q5T742 122 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 LCE1AQ5T7P2 110 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 AWAT2Q6E213 333 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 CYB5RLQ6IPT4 315 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 GRHL2Q6ISB3 625 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 TECPR1Q7Z6L1 1165 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 MRPL10Q7Z7H8 261 aaKnown RBP2.79□□□□□ -1.96
CD44-216ENST00000525293 KRT73Q86Y46 540 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 P3H2Q8IVL5 708 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 OTUD6BQ8N6M0 293 aa2.79□□□□□ -1.96
CD44-216ENST00000525293 NRACQ8N912 160 aa2.79□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms