RNA–Protein interactions for RNA: ENST00000515420.1

CLCN3-210, Transcript of chloride voltage-gated channel 3, humanhuman

TSL 3

Gene CLCN3, Length 735 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3-210ENST00000515420 KRT31Q15323 416 aa13.39□□□□□ -0.27
CLCN3-210ENST00000515420 ARHGAP44Q17R89 818 aa13.39□□□□□ -0.27
CLCN3-210ENST00000515420 LY6G5CQ5SRR4 150 aa13.39□□□□□ -0.27
CLCN3-210ENST00000515420 DPY19L2P1Q6NXN4 242 aa13.39□□□□□ -0.27
CLCN3-210ENST00000515420 MSANTD2Q6P1R3 559 aa13.39□□□□□ -0.27
CLCN3-210ENST00000515420 Q6ZS52 159 aa13.39□□□□□ -0.27
CLCN3-210ENST00000515420 RSRC2Q7L4I2 434 aaKnown RBP13.39□□□□□ -0.27
CLCN3-210ENST00000515420 ZBTB44Q8NCP5 570 aa13.39□□□□□ -0.27
CLCN3-210ENST00000515420 PLD4Q96BZ4 506 aa13.39□□□□□ -0.27
CLCN3-210ENST00000515420 PHOX2BQ99453 314 aa13.39□□□□□ -0.27
CLCN3-210ENST00000515420 TRIM62Q9BVG3 475 aa13.39□□□□□ -0.27
CLCN3-210ENST00000515420 NAT10Q9H0A0 1025 aaKnown RBP13.39□□□□□ -0.27
CLCN3-210ENST00000515420 PLCB1Q9NQ66 1216 aa13.39□□□□□ -0.27
CLCN3-210ENST00000515420 ZSCAN32Q9NX65 697 aa13.39□□□□□ -0.27
CLCN3-210ENST00000515420 MARK1Q9P0L2 795 aa13.39□□□□□ -0.27
CLCN3-210ENST00000515420 MARCH2Q9P0N8 246 aa13.39□□□□□ -0.27
CLCN3-210ENST00000515420 NUDT5Q9UKK9 219 aa13.39□□□□□ -0.27
CLCN3-210ENST00000515420 PCDHGC3Q9UN70 934 aa13.39□□□□□ -0.27
CLCN3-210ENST00000515420 A0A0A0MRY4 1105 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 YJEFN3A6XGL0 299 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 E7ENQ6 273 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 MDM4O15151 490 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 EGFP01133 1207 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 LTFP02788 710 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 LCP1P13796 627 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 CHKAP35790 457 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 RGS7P49802 495 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 APBA1Q02410 837 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 TYRO3Q06418 890 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 KCNMA1Q12791 1236 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 EFEMP1Q12805 493 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 KLHDC7AQ5VTJ3 777 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 BSPRYQ5W0U4 402 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 BEND5Q7L4P6 421 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 MIB1Q86YT6 1006 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 ETFBKMTQ8IXQ9 262 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 FAM71AQ8IYT1 594 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 RNF139Q8WU17 664 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 GOLGA1Q92805 767 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 NKD2Q969F2 451 aaPredicted RBP13.38□□□□□ -0.27
CLCN3-210ENST00000515420 WBP2Q969T9 261 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 ACDQ96AP0 544 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 PNKPQ96T60 521 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 BPIFA3Q9BQP9 254 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 SLC4A5Q9BY07 1137 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 LHX5Q9H2C1 402 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 FBRSL1Q9HCM7 1045 aaKnown RBP13.38□□□□□ -0.27
CLCN3-210ENST00000515420 FANCLQ9NW38 375 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 TAB2Q9NYJ8 693 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 RASAL2Q9UJF2 1139 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 HBS1LQ9Y450 684 aaKnown RBP13.38□□□□□ -0.27
CLCN3-210ENST00000515420 ATG2BQ96BY7 2078 aa13.38□□□□□ -0.27
CLCN3-210ENST00000515420 LRRC10BA6NIK2 292 aa13.37□□□□□ -0.27
CLCN3-210ENST00000515420 SCAMP3O14828 347 aaKnown RBP13.37□□□□□ -0.27
CLCN3-210ENST00000515420 LILRB5O75023 590 aa13.37□□□□□ -0.27
CLCN3-210ENST00000515420 RNF40O75150 1001 aa13.37□□□□□ -0.27
CLCN3-210ENST00000515420 GABBR2O75899 941 aa13.37□□□□□ -0.27
CLCN3-210ENST00000515420 LATS1O95835 1130 aa13.37□□□□□ -0.27
CLCN3-210ENST00000515420 UCHL3P15374 230 aa13.37□□□□□ -0.27
CLCN3-210ENST00000515420 ZNF18P17022 549 aa13.37□□□□□ -0.27
CLCN3-210ENST00000515420 USP8P40818 1118 aa13.37□□□□□ -0.27
CLCN3-210ENST00000515420 SATB1Q01826 763 aa13.37□□□□□ -0.27
CLCN3-210ENST00000515420 KLHL40Q2TBA0 621 aa13.37□□□□□ -0.27
CLCN3-210ENST00000515420 HSF5Q4G112 596 aaPredicted RBP13.37□□□□□ -0.27
CLCN3-210ENST00000515420 FKBP15Q5T1M5 1219 aa13.37□□□□□ -0.27
CLCN3-210ENST00000515420 NUDT18Q6ZVK8 323 aa13.37□□□□□ -0.27
CLCN3-210ENST00000515420 TMEM110Q86TL2 294 aa13.37□□□□□ -0.27
CLCN3-210ENST00000515420 PIP4P2Q8N4L2 257 aa13.37□□□□□ -0.27
CLCN3-210ENST00000515420 EZH1Q92800 747 aaPredicted RBP13.37□□□□□ -0.27
CLCN3-210ENST00000515420 NAA15Q9BXJ9 866 aaKnown RBP13.37□□□□□ -0.27
CLCN3-210ENST00000515420 WDR35Q9P2L0 1181 aa13.37□□□□□ -0.27
CLCN3-210ENST00000515420 LIMA1Q9UHB6 759 aaKnown RBP13.37□□□□□ -0.27
CLCN3-210ENST00000515420 CCDC163A0A0D9SF12 145 aa13.36□□□□□ -0.27
CLCN3-210ENST00000515420 SLC12A8A0AV02 714 aa13.36□□□□□ -0.27
CLCN3-210ENST00000515420 PRR23AA6NEV1 266 aa13.36□□□□□ -0.27
CLCN3-210ENST00000515420 K7ESF4 209 aa13.36□□□□□ -0.27
CLCN3-210ENST00000515420 FOXN3O00409 490 aaPredicted RBP13.36□□□□□ -0.27
CLCN3-210ENST00000515420 CACNG3O60359 315 aa13.36□□□□□ -0.27
CLCN3-210ENST00000515420 KAT7O95251 611 aa13.36□□□□□ -0.27
CLCN3-210ENST00000515420 CALCAP01258 141 aa13.36□□□□□ -0.27
CLCN3-210ENST00000515420 APODP05090 189 aa13.36□□□□□ -0.27
CLCN3-210ENST00000515420 CLCN1P35523 988 aa13.36□□□□□ -0.27
CLCN3-210ENST00000515420 GRIA2P42262 883 aa13.36□□□□□ -0.27
CLCN3-210ENST00000515420 SNX16P57768 344 aa13.36□□□□□ -0.27
CLCN3-210ENST00000515420 ZNF445P59923 1031 aa13.36□□□□□ -0.27
CLCN3-210ENST00000515420 PDCLQ13371 301 aa13.36□□□□□ -0.27
CLCN3-210ENST00000515420 NNTQ13423 1086 aa13.36□□□□□ -0.27
CLCN3-210ENST00000515420 RAPGEF1Q13905 1077 aa13.36□□□□□ -0.27
CLCN3-210ENST00000515420 DRAP1Q14919 205 aaPredicted RBP13.36□□□□□ -0.27
CLCN3-210ENST00000515420 NCAPHQ15003 741 aa13.36□□□□□ -0.27
CLCN3-210ENST00000515420 TRIP4Q15650 581 aaPredicted RBP13.36□□□□□ -0.27
CLCN3-210ENST00000515420 NAIF1Q69YI7 327 aaPredicted RBP13.36□□□□□ -0.27
CLCN3-210ENST00000515420 CAVIN1Q6NZI2 390 aaKnown RBP13.36□□□□□ -0.27
CLCN3-210ENST00000515420 DENND1BQ6P3S1 775 aa13.36□□□□□ -0.27
CLCN3-210ENST00000515420 SYT13Q7L8C5 426 aa13.36□□□□□ -0.27
CLCN3-210ENST00000515420 ALYREFQ86V81 257 aaKnown RBP13.36□□□□□ -0.27
CLCN3-210ENST00000515420 TMEM25Q86YD3 366 aa13.36□□□□□ -0.27
CLCN3-210ENST00000515420 FMNL3Q8IVF7 1028 aa13.36□□□□□ -0.27
CLCN3-210ENST00000515420 FAM217AQ8IXS0 508 aa13.36□□□□□ -0.27
CLCN3-210ENST00000515420 PHTF2Q8N3S3 785 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms