RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 SCYL2Q6P3W7 929 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 C1orf228Q6PIY5 440 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 TRIM42Q8IWZ5 723 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 OR5B17Q8NGF7 314 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 KLRG1Q96E93 195 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 SIKE1Q9BRV8 207 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 TMCO1Q9UM00 188 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 NUB1Q9Y5A7 615 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 PTPRJQ12913 1337 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 TCRBV7S3A2A0A539 114 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 FKBP6O75344 327 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 PIGRP01833 764 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 UQCRBP14927 111 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 FOLH1Q04609 750 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 C1QBPQ07021 282 aaKnown RBP9.99□□□□□ -0.81
VCAN-210ENST00000513960 NXNQ6DKJ4 435 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.99□□□□□ -0.81
VCAN-210ENST00000513960 HPS6Q86YV9 775 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 BANPQ8N9N5 519 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 SKA1Q96BD8 255 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 MMP19Q99542 508 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 S100A14Q9HCY8 104 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 SHOC2Q9UQ13 582 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 HEY1Q9Y5J3 304 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 CLUHO75153 1309 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 PIK3R2O00459 728 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 ICAM3P32942 547 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 AP3M2P53677 418 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 ACTR3P61158 418 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 PDE1BQ01064 536 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 PTP4A2Q12974 167 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 CDO1Q16878 200 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 EFHC2Q5JST6 749 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 ACAD11Q709F0 780 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 EEPD1Q7L9B9 569 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 NCAPG2Q86XI2 1143 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 PHF13Q86YI8 300 aaPredicted RBP9.99□□□□□ -0.81
VCAN-210ENST00000513960 ZNF606Q8WXB4 792 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 ATXN7L3BQ96GX2 97 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 SLITRK1Q96PX8 696 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 TMEM134Q9H6X4 195 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 TLE6Q9H808 572 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 RAB6BQ9NRW1 208 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 GGA3Q9NZ52 723 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 INPP5FQ9Y2H2 1132 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 ZNF541Q9H0D2 1346 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 NEMP1O14524 444 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 TOP3BO95985 862 aaKnown RBP9.99□□□□□ -0.81
VCAN-210ENST00000513960 DLDP09622 509 aaKnown RBP9.99□□□□□ -0.81
VCAN-210ENST00000513960 SRGAP2CP0DJJ0 459 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 RBP3P10745 1247 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 INHBCP55103 352 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 PPP2R5DQ14738 602 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 RNASEH2BQ5TBB1 312 aaKnown RBP9.99□□□□□ -0.81
VCAN-210ENST00000513960 B3GNT6Q6ZMB0 384 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 PCGF5Q86SE9 256 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 ZBTB8OSQ8IWT0 167 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 KATNAL2Q8IYT4 538 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 MRPL4Q9BYD3 311 aaKnown RBP9.99□□□□□ -0.81
VCAN-210ENST00000513960 NIFKQ9BYG3 293 aaKnown RBP9.99□□□□□ -0.81
VCAN-210ENST00000513960 HAPLN2Q9GZV7 340 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 ACSS3Q9H6R3 686 aa9.99□□□□□ -0.81
VCAN-210ENST00000513960 NDC80O14777 642 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 ATG7O95352 703 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 KCNA4P22459 653 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 EFNA5P52803 228 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 LSAMPQ13449 338 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 CAPSQ13938 189 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 KRT81Q14533 505 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 PLEKHA7Q6IQ23 1121 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 LRRC8BQ6P9F7 803 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 DEPDC1BQ8WUY9 529 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 MAF1Q9H063 256 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 PCDH9Q9HC56 1237 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 ZC3H7BQ9UGR2 993 aaKnown RBP9.98□□□□□ -0.81
VCAN-210ENST00000513960 RGPD3A6NKT7 1758 aaPredicted RBP9.98□□□□□ -0.81
VCAN-210ENST00000513960 RGPD4Q7Z3J3 1758 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 MYH9P35579 1960 aaKnown RBP9.98□□□□□ -0.81
VCAN-210ENST00000513960 ZNF189O75820 626 aaPredicted RBP9.98□□□□□ -0.81
VCAN-210ENST00000513960 ASLP04424 464 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 CALB1P05937 261 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 APRTP07741 180 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 UBA1P22314 1058 aaKnown RBP9.98□□□□□ -0.81
VCAN-210ENST00000513960 RPL22P35268 128 aaKnown RBP9.98□□□□□ -0.81
VCAN-210ENST00000513960 RGS2P41220 211 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 SLC44A4Q53GD3 710 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 TSHZ1Q6ZSZ6 1077 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 TDRPQ86YL5 185 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 TMEM35BQ8NCS4 154 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 SEPT1Q8WYJ6 367 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 ARHGEF38Q9NXL2 777 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 TXNDC16Q9P2K2 825 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 LZTS1Q9Y250 596 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 KIAA1217Q5T5P2 1943 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 TCRBV9S1A1TA0A576 114 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 E9PBE3 544 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 KLHL41O60662 606 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 MAGEC1O60732 1142 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 SRGAP2BP0DMP2 458 aa9.98□□□□□ -0.81
VCAN-210ENST00000513960 TFAMQ00059 246 aaKnown RBP9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms