RNA–Protein interactions for RNA: ENST00000506630.1

TCOF1-209, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 897 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-209ENST00000506630 ULBP1Q9BZM6 244 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 EBF3Q9H4W6 596 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 NMUR1Q9HB89 426 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 GKN1Q9NS71 199 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 DUS2Q9NX74 493 aaKnown RBP13.78□□□□□ -0.2
TCOF1-209ENST00000506630 LIMA1Q9UHB6 759 aaKnown RBP13.78□□□□□ -0.2
TCOF1-209ENST00000506630 ANGPTL2Q9UKU9 493 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 FHOD1Q9Y613 1164 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 WNT6Q9Y6F9 365 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 USP3Q9Y6I4 520 aa13.78□□□□□ -0.2
TCOF1-209ENST00000506630 HRO43593 1189 aa13.77□□□□□ -0.21
TCOF1-209ENST00000506630 GDF9O60383 454 aa13.77□□□□□ -0.21
TCOF1-209ENST00000506630 PNMA6AP0CW24 399 aaPredicted RBP13.77□□□□□ -0.21
TCOF1-209ENST00000506630 IRF1P10914 325 aa13.77□□□□□ -0.21
TCOF1-209ENST00000506630 RALAP11233 206 aa13.77□□□□□ -0.21
TCOF1-209ENST00000506630 RARGP13631 454 aa13.77□□□□□ -0.21
TCOF1-209ENST00000506630 LCP1P13796 627 aa13.77□□□□□ -0.21
TCOF1-209ENST00000506630 TCF3P15923 654 aa13.77□□□□□ -0.21
TCOF1-209ENST00000506630 ZNF18P17022 549 aa13.77□□□□□ -0.21
TCOF1-209ENST00000506630 PSEN1P49768 467 aa13.77□□□□□ -0.21
TCOF1-209ENST00000506630 ZNF165P49910 485 aa13.77□□□□□ -0.21
TCOF1-209ENST00000506630 ZXDBP98169 803 aa13.77□□□□□ -0.21
TCOF1-209ENST00000506630 PDGFRLQ15198 375 aa13.77□□□□□ -0.21
TCOF1-209ENST00000506630 SKOR2Q2VWA4 1001 aaPredicted RBP13.77□□□□□ -0.21
TCOF1-209ENST00000506630 ITPRIPL2Q3MIP1 535 aa13.77□□□□□ -0.21
TCOF1-209ENST00000506630 CEP68Q76N32 757 aa13.77□□□□□ -0.21
TCOF1-209ENST00000506630 DDX42Q86XP3 938 aaKnown RBP eCLIP13.77□□□□□ -0.21
TCOF1-209ENST00000506630 DHX40Q8IX18 779 aaKnown RBP13.77□□□□□ -0.21
TCOF1-209ENST00000506630 OSCP1Q8WVF1 389 aa13.77□□□□□ -0.21
TCOF1-209ENST00000506630 PCMTD1Q96MG8 357 aaPredicted RBP13.77□□□□□ -0.21
TCOF1-209ENST00000506630 FAM83CQ9BQN1 747 aa13.77□□□□□ -0.21
TCOF1-209ENST00000506630 HSD3B7Q9H2F3 369 aa13.77□□□□□ -0.21
TCOF1-209ENST00000506630 ACP6Q9NPH0 428 aa13.77□□□□□ -0.21
TCOF1-209ENST00000506630 CYLDQ9NQC7 956 aa13.77□□□□□ -0.21
TCOF1-209ENST00000506630 HPS4Q9NQG7 708 aa13.77□□□□□ -0.21
TCOF1-209ENST00000506630 OSER1Q9NX31 292 aa13.77□□□□□ -0.21
TCOF1-209ENST00000506630 CFAP97Q9P2B7 532 aa13.77□□□□□ -0.21
TCOF1-209ENST00000506630 NUDT5Q9UKK9 219 aa13.77□□□□□ -0.21
TCOF1-209ENST00000506630 SH3BP1Q9Y3L3 701 aa13.77□□□□□ -0.21
TCOF1-209ENST00000506630 PIK3R2O00459 728 aa13.76□□□□□ -0.21
TCOF1-209ENST00000506630 SCAMP3O14828 347 aaKnown RBP13.76□□□□□ -0.21
TCOF1-209ENST00000506630 TBX18O95935 607 aa13.76□□□□□ -0.21
TCOF1-209ENST00000506630 ZBED1O96006 694 aa13.76□□□□□ -0.21
TCOF1-209ENST00000506630 ATP1A3P13637 1013 aa13.76□□□□□ -0.21
TCOF1-209ENST00000506630 ARSAP15289 507 aa13.76□□□□□ -0.21
TCOF1-209ENST00000506630 ATP5C1P36542 298 aaKnown RBP13.76□□□□□ -0.21
TCOF1-209ENST00000506630 KLK7P49862 253 aa13.76□□□□□ -0.21
TCOF1-209ENST00000506630 RUNX3Q13761 415 aa13.76□□□□□ -0.21
TCOF1-209ENST00000506630 GAS6Q14393 721 aa13.76□□□□□ -0.21
TCOF1-209ENST00000506630 DRAP1Q14919 205 aaPredicted RBP13.76□□□□□ -0.21
TCOF1-209ENST00000506630 C10orf120Q5SQS8 335 aa13.76□□□□□ -0.21
TCOF1-209ENST00000506630 KLHDC7AQ5VTJ3 777 aa13.76□□□□□ -0.21
TCOF1-209ENST00000506630 HEATR6Q6AI08 1181 aaKnown RBP13.76□□□□□ -0.21
TCOF1-209ENST00000506630 DPY19L2P1Q6NXN4 242 aa13.76□□□□□ -0.21
TCOF1-209ENST00000506630 PMF1Q6P1K2 205 aa13.76□□□□□ -0.21
TCOF1-209ENST00000506630 DENND1BQ6P3S1 775 aa13.76□□□□□ -0.21
TCOF1-209ENST00000506630 TXNDC11Q6PKC3 985 aa13.76□□□□□ -0.21
TCOF1-209ENST00000506630 SCD5Q86SK9 330 aa13.76□□□□□ -0.21
TCOF1-209ENST00000506630 TADA2BQ86TJ2 420 aa13.76□□□□□ -0.21
TCOF1-209ENST00000506630 ARHGAP18Q8N392 663 aa13.76□□□□□ -0.21
TCOF1-209ENST00000506630 ZNF606Q8WXB4 792 aa13.76□□□□□ -0.21
TCOF1-209ENST00000506630 KCTD13Q8WZ19 329 aa13.76□□□□□ -0.21
TCOF1-209ENST00000506630 NDRG1Q92597 394 aaKnown RBP13.76□□□□□ -0.21
TCOF1-209ENST00000506630 ATP2A3Q93084 1043 aa13.76□□□□□ -0.21
TCOF1-209ENST00000506630 C8orf33Q9H7E9 229 aaPredicted RBP13.76□□□□□ -0.21
TCOF1-209ENST00000506630 MTPAPQ9NVV4 582 aaKnown RBP eCLIP13.76□□□□□ -0.219e-6■■□□□ 12.8
TCOF1-209ENST00000506630 C2orf42Q9NWW7 574 aa13.76□□□□□ -0.21
TCOF1-209ENST00000506630 LGALS16A8MUM7 142 aa13.75□□□□□ -0.21
TCOF1-209ENST00000506630 SPECC1L-ADORA2AF8WAN1 911 aa13.75□□□□□ -0.21
TCOF1-209ENST00000506630 FOXN3O00409 490 aaPredicted RBP13.75□□□□□ -0.21
TCOF1-209ENST00000506630 MDM4O15151 490 aa13.75□□□□□ -0.21
TCOF1-209ENST00000506630 PAPSS2O95340 614 aaPredicted RBP13.75□□□□□ -0.21
TCOF1-209ENST00000506630 UCHL3P15374 230 aa13.75□□□□□ -0.21
TCOF1-209ENST00000506630 CTHP32929 405 aa13.75□□□□□ -0.21
TCOF1-209ENST00000506630 YWHAGP61981 247 aaKnown RBP eCLIP13.75□□□□□ -0.21
TCOF1-209ENST00000506630 UBXN1Q04323 297 aa13.75□□□□□ -0.21
TCOF1-209ENST00000506630 PTK2Q05397 1052 aa13.75□□□□□ -0.21
TCOF1-209ENST00000506630 GOLGA8FQ08AF8 430 aa13.75□□□□□ -0.21
TCOF1-209ENST00000506630 GOLGA8DPQ0D2H9 430 aa13.75□□□□□ -0.21
TCOF1-209ENST00000506630 SRSF5Q13243 272 aaKnown RBP13.75□□□□□ -0.21
TCOF1-209ENST00000506630 ZSCAN23Q3MJ62 389 aa13.75□□□□□ -0.21
TCOF1-209ENST00000506630 AASDHQ4L235 1098 aaPredicted RBP13.75□□□□□ -0.21
TCOF1-209ENST00000506630 DGKKQ5KSL6 1271 aa13.75□□□□□ -0.21
TCOF1-209ENST00000506630 BTBD8Q5XKL5 378 aa13.75□□□□□ -0.21
TCOF1-209ENST00000506630 RSRC2Q7L4I2 434 aaKnown RBP13.75□□□□□ -0.21
TCOF1-209ENST00000506630 CPA6Q8N4T0 437 aa13.75□□□□□ -0.21
TCOF1-209ENST00000506630 C12orf50Q8NA57 414 aaPredicted RBP13.75□□□□□ -0.21
TCOF1-209ENST00000506630 SLC35F5Q8WV83 523 aa13.75□□□□□ -0.21
TCOF1-209ENST00000506630 CHFRQ96EP1 664 aa13.75□□□□□ -0.21
TCOF1-209ENST00000506630 ZFRQ96KR1 1074 aaKnown RBP13.75□□□□□ -0.21
TCOF1-209ENST00000506630 CDK5RAP1Q96SZ6 601 aaKnown RBP13.75□□□□□ -0.21
TCOF1-209ENST00000506630 GANQ9H2C0 597 aa13.75□□□□□ -0.21
TCOF1-209ENST00000506630 PLCB1Q9NQ66 1216 aa13.75□□□□□ -0.21
TCOF1-209ENST00000506630 ST7Q9NRC1 585 aa13.75□□□□□ -0.21
TCOF1-209ENST00000506630 FAM207AQ9NSI2 230 aaPredicted RBP13.75□□□□□ -0.21
TCOF1-209ENST00000506630 RBM12Q9NTZ6 932 aaKnown RBP13.75□□□□□ -0.21
TCOF1-209ENST00000506630 RASAL2Q9UJF2 1139 aa13.75□□□□□ -0.21
TCOF1-209ENST00000506630 MAP1BP46821 2468 aaKnown RBP13.75□□□□□ -0.21
TCOF1-209ENST00000506630 MYO18AQ92614 2054 aaKnown RBP13.75□□□□□ -0.21
TCOF1-209ENST00000506630 OTOL1A6NHN0 477 aaPredicted RBP13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms