RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 ADAM32Q8TC27 787 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 USP13Q92995 863 aaPredicted RBP12.44□□□□□ -0.42
CUX1-210ENST00000497815 TRIM11Q96F44 468 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 PDLIM2Q96JY6 352 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 ASB16Q96NS5 453 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 MCEEQ96PE7 176 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 SLC2A13Q96QE2 648 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 CDK5RAP1Q96SZ6 601 aaKnown RBP12.44□□□□□ -0.42
CUX1-210ENST00000497815 KXD1Q9BQD3 176 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 TRIM62Q9BVG3 475 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 OLA1Q9NTK5 396 aaKnown RBP12.44□□□□□ -0.42
CUX1-210ENST00000497815 PARVAQ9NVD7 372 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 ASNSD1Q9NWL6 643 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP12.44□□□□□ -0.423e-6■■■■□ 19.4
CUX1-210ENST00000497815 MARCH2Q9P0N8 246 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 COX16Q9P0S2 106 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 EPS15L1Q9UBC2 864 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 SFMBT1Q9UHJ3 866 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 DNMT3LQ9UJW3 386 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 TMEM59LQ9UK28 342 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 CCL26Q9Y258 94 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 USTQ9Y2C2 406 aa12.44□□□□□ -0.42
CUX1-210ENST00000497815 EPN1Q9Y6I3 576 aaPredicted RBP12.44□□□□□ -0.42
CUX1-210ENST00000497815 ZFP37Q9Y6Q3 630 aaPredicted RBP12.44□□□□□ -0.42
CUX1-210ENST00000497815 OBSL1O75147 1896 aa12.43□□□□□ -0.42
CUX1-210ENST00000497815 SLC12A8A0AV02 714 aa12.43□□□□□ -0.42
CUX1-210ENST00000497815 ANKRD62A6NC57 917 aa12.43□□□□□ -0.42
CUX1-210ENST00000497815 SIGLEC16A6NMB1 481 aa12.43□□□□□ -0.42
CUX1-210ENST00000497815 DPYSL4O14531 572 aa12.43□□□□□ -0.42
CUX1-210ENST00000497815 SCAMP3O14828 347 aaKnown RBP12.43□□□□□ -0.42
CUX1-210ENST00000497815 IPO7O95373 1038 aaKnown RBP12.43□□□□□ -0.42
CUX1-210ENST00000497815 OLFM2O95897 454 aa12.43□□□□□ -0.42
CUX1-210ENST00000497815 MYBL1P10243 752 aa12.43□□□□□ -0.42
CUX1-210ENST00000497815 BMP1P13497 986 aa12.43□□□□□ -0.42
CUX1-210ENST00000497815 RFC1P35251 1148 aaPredicted RBP12.43□□□□□ -0.42
CUX1-210ENST00000497815 SCNN1AP37088 669 aa12.43□□□□□ -0.42
CUX1-210ENST00000497815 MAGEA1P43355 309 aa12.43□□□□□ -0.42
CUX1-210ENST00000497815 SULT1E1P49888 294 aa12.43□□□□□ -0.42
CUX1-210ENST00000497815 PITX1P78337 314 aaPredicted RBP12.43□□□□□ -0.42
CUX1-210ENST00000497815 MAMLD1Q13495 774 aa12.43□□□□□ -0.42
CUX1-210ENST00000497815 TANGO2Q6ICL3 276 aa12.43□□□□□ -0.42
CUX1-210ENST00000497815 DCUN1D2Q6PH85 259 aa12.43□□□□□ -0.42
CUX1-210ENST00000497815 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.43□□□□□ -0.424e-7■■■□□ 15
CUX1-210ENST00000497815 ADHFE1Q8IWW8 467 aa12.43□□□□□ -0.42
CUX1-210ENST00000497815 ACRBPQ8NEB7 543 aa12.43□□□□□ -0.42
CUX1-210ENST00000497815 DQX1Q8TE96 717 aaKnown RBP12.43□□□□□ -0.42
CUX1-210ENST00000497815 RSAD2Q8WXG1 361 aa12.43□□□□□ -0.42
CUX1-210ENST00000497815 CTNNBL1Q8WYA6 563 aaPredicted RBP12.43□□□□□ -0.42
CUX1-210ENST00000497815 ARHGEF26Q96DR7 871 aa12.43□□□□□ -0.42
CUX1-210ENST00000497815 RSPRY1Q96DX4 576 aa12.43□□□□□ -0.42
CUX1-210ENST00000497815 DESI2Q9BSY9 194 aa12.43□□□□□ -0.42
CUX1-210ENST00000497815 FAM204AQ9H8W3 233 aa12.43□□□□□ -0.42
CUX1-210ENST00000497815 GKN1Q9NS71 199 aa12.43□□□□□ -0.42
CUX1-210ENST00000497815 TDP1Q9NUW8 608 aa12.43□□□□□ -0.42
CUX1-210ENST00000497815 LIMD1Q9UGP4 676 aa12.43□□□□□ -0.42
CUX1-210ENST00000497815 ZMYM5Q9UJ78 669 aa12.43□□□□□ -0.42
CUX1-210ENST00000497815 DOCK6Q96HP0 2047 aa12.43□□□□□ -0.42
CUX1-210ENST00000497815 ZNF638Q14966 1978 aaKnown RBP12.43□□□□□ -0.42
CUX1-210ENST00000497815 TCRBV5S1A1TA0A578 114 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 SOBPA7XYQ1 873 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 EIF3CLB5ME19 914 aaKnown RBP12.42□□□□□ -0.42
CUX1-210ENST00000497815 LEFTY2O00292 366 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 LCA5LO95447 670 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 PDGFRAP16234 1089 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 PFKLP17858 780 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 TFE3P19532 575 aaPredicted RBP12.42□□□□□ -0.42
CUX1-210ENST00000497815 FCARP24071 287 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 NOS2P35228 1153 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 MATKP42679 507 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 GSCP56915 257 aaPredicted RBP12.42□□□□□ -0.42
CUX1-210ENST00000497815 RPL7AP62424 266 aaKnown RBP12.42□□□□□ -0.42
CUX1-210ENST00000497815 GPC5P78333 572 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 SLC7A9P82251 487 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 ZXDBP98169 803 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 ATP11AP98196 1134 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 ZP2Q05996 745 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 CCDC173Q0VFZ6 552 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 NME3Q13232 169 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 GRM2Q14416 872 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 PPP1R15BQ5SWA1 713 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 PLEKHA7Q6IQ23 1121 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 TRNP1Q6NT89 227 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 MSANTD2Q6P1R3 559 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 KLHDC10Q6PID8 442 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 MTSS1LQ765P7 747 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 TAC4Q86UU9 113 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 PLCD3Q8N3E9 789 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 ZNF276Q8N554 614 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 CCDC112Q8NEF3 446 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 SH3RF2Q8TEC5 729 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 RXFP2Q8WXD0 754 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 FGF14Q92915 247 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 ZFRQ96KR1 1074 aaKnown RBP12.42□□□□□ -0.42
CUX1-210ENST00000497815 CFAP57Q96MR6 1250 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 EIF3CQ99613 913 aaKnown RBP12.42□□□□□ -0.42
CUX1-210ENST00000497815 RPP25Q9BUL9 199 aaKnown RBP12.42□□□□□ -0.42
CUX1-210ENST00000497815 KLF16Q9BXK1 252 aaPredicted RBP12.42□□□□□ -0.42
CUX1-210ENST00000497815 PLA2G2FQ9BZM2 168 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 SMOC2Q9H3U7 446 aa12.42□□□□□ -0.42
CUX1-210ENST00000497815 ZFP14Q9HCL3 533 aa12.42□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms