RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 TMEM199Q8N511 208 aa4.73□□□□□ -1.65
VPS50-219ENST00000495039 FAM71DQ8N9W8 422 aa4.73□□□□□ -1.65
VPS50-219ENST00000495039 SLC44A5Q8NCS7 719 aa4.73□□□□□ -1.65
VPS50-219ENST00000495039 CHMP4CQ96CF2 233 aa4.73□□□□□ -1.65
VPS50-219ENST00000495039 NTPCRQ9BSD7 190 aaKnown RBP4.73□□□□□ -1.65
VPS50-219ENST00000495039 MSRB1Q9NZV6 116 aa4.73□□□□□ -1.65
VPS50-219ENST00000495039 PCDHA12Q9UN75 941 aa4.73□□□□□ -1.65
VPS50-219ENST00000495039 COL4A3BPQ9Y5P4 624 aa4.73□□□□□ -1.65
VPS50-219ENST00000495039 SIRT4Q9Y6E7 314 aaPredicted RBP4.73□□□□□ -1.65
VPS50-219ENST00000495039 IFITM10A6NMD0 228 aa4.72□□□□□ -1.65
VPS50-219ENST00000495039 ACOT8O14734 319 aa4.72□□□□□ -1.65
VPS50-219ENST00000495039 RRP9O43818 475 aaKnown RBP4.72□□□□□ -1.65
VPS50-219ENST00000495039 KITP10721 976 aa4.72□□□□□ -1.65
VPS50-219ENST00000495039 FGF3P11487 239 aaPredicted RBP4.72□□□□□ -1.65
VPS50-219ENST00000495039 EN2P19622 333 aaPredicted RBP4.72□□□□□ -1.65
VPS50-219ENST00000495039 JAK3P52333 1124 aa4.72□□□□□ -1.65
VPS50-219ENST00000495039 IFIT1BQ5T764 474 aaKnown RBP4.72□□□□□ -1.65
VPS50-219ENST00000495039 KCTD20Q7Z5Y7 419 aa4.72□□□□□ -1.65
VPS50-219ENST00000495039 DIS3LQ8TF46 1054 aaKnown RBP4.72□□□□□ -1.65
VPS50-219ENST00000495039 PIGKQ92643 395 aa4.72□□□□□ -1.65
VPS50-219ENST00000495039 LMLNQ96KR4 655 aa4.72□□□□□ -1.65
VPS50-219ENST00000495039 PCDH12Q9NPG4 1184 aa4.72□□□□□ -1.65
VPS50-219ENST00000495039 STEAP1Q9UHE8 339 aa4.72□□□□□ -1.65
VPS50-219ENST00000495039 RIMKLBQ9ULI2 386 aa4.72□□□□□ -1.65
VPS50-219ENST00000495039 SPATA31A1Q5TZJ5 1347 aa4.72□□□□□ -1.65
VPS50-219ENST00000495039 MBD3L4A6NDZ8 208 aaPredicted RBP4.71□□□□□ -1.66
VPS50-219ENST00000495039 MBD3L3A6NE82 208 aaPredicted RBP4.71□□□□□ -1.66
VPS50-219ENST00000495039 PARP1P09874 1014 aaKnown RBP4.71□□□□□ -1.66
VPS50-219ENST00000495039 HOXB2P14652 356 aa4.71□□□□□ -1.66
VPS50-219ENST00000495039 RPS6KB1P23443 525 aa4.71□□□□□ -1.66
VPS50-219ENST00000495039 ARRB2P32121 409 aa4.71□□□□□ -1.66
VPS50-219ENST00000495039 KCNJ4P48050 445 aa4.71□□□□□ -1.66
VPS50-219ENST00000495039 PTDSS1P48651 473 aaKnown RBP4.71□□□□□ -1.66
VPS50-219ENST00000495039 POLD2P49005 469 aa4.71□□□□□ -1.66
VPS50-219ENST00000495039 P2RX3P56373 397 aa4.71□□□□□ -1.66
VPS50-219ENST00000495039 ZNF267Q14586 743 aaPredicted RBP4.71□□□□□ -1.66
VPS50-219ENST00000495039 GFI1BQ5VTD9 330 aa4.71□□□□□ -1.66
VPS50-219ENST00000495039 TRAPPC11Q7Z392 1133 aa4.71□□□□□ -1.66
VPS50-219ENST00000495039 IQCF1Q8N6M8 205 aa4.71□□□□□ -1.66
VPS50-219ENST00000495039 OR56A3Q8NH54 315 aa4.71□□□□□ -1.66
VPS50-219ENST00000495039 DNASE2BQ8WZ79 361 aa4.71□□□□□ -1.66
VPS50-219ENST00000495039 MIB2Q96AX9 1013 aa4.71□□□□□ -1.66
VPS50-219ENST00000495039 ZNF668Q96K58 619 aaPredicted RBP4.71□□□□□ -1.66
VPS50-219ENST00000495039 NT5C1BQ96P26 610 aa4.71□□□□□ -1.66
VPS50-219ENST00000495039 CINPQ9BW66 212 aaPredicted RBP4.71□□□□□ -1.66
VPS50-219ENST00000495039 BRINP2Q9C0B6 783 aa4.71□□□□□ -1.66
VPS50-219ENST00000495039 MYLK2Q9H1R3 596 aa4.71□□□□□ -1.66
VPS50-219ENST00000495039 SLC12A5Q9H2X9 1139 aa4.71□□□□□ -1.66
VPS50-219ENST00000495039 ZMAT3Q9HA38 289 aaKnown RBP4.71□□□□□ -1.66
VPS50-219ENST00000495039 PAPOLBQ9NRJ5 636 aaKnown RBP4.71□□□□□ -1.66
VPS50-219ENST00000495039 GJB4Q9NTQ9 266 aa4.71□□□□□ -1.66
VPS50-219ENST00000495039 GABBR1Q9UBS5 961 aa4.71□□□□□ -1.66
VPS50-219ENST00000495039 ANKRD6Q9Y2G4 727 aa4.71□□□□□ -1.66
VPS50-219ENST00000495039 SLC22A23A1A5C7 686 aa4.7□□□□□ -1.66
VPS50-219ENST00000495039 H3BML4 177 aa4.7□□□□□ -1.66
VPS50-219ENST00000495039 H7C4K7 107 aa4.7□□□□□ -1.66
VPS50-219ENST00000495039 PHGDHO43175 533 aaKnown RBP4.7□□□□□ -1.66
VPS50-219ENST00000495039 PRAMEF2O60811 474 aa4.7□□□□□ -1.66
VPS50-219ENST00000495039 PIAS2O75928 621 aa4.7□□□□□ -1.66
VPS50-219ENST00000495039 IGKV3-20P01619 116 aa4.7□□□□□ -1.66
VPS50-219ENST00000495039 HOXA7P31268 230 aaPredicted RBP4.7□□□□□ -1.66
VPS50-219ENST00000495039 ITGA8P53708 1063 aa4.7□□□□□ -1.66
VPS50-219ENST00000495039 CCDC15Q0P6D6 951 aa4.7□□□□□ -1.66
VPS50-219ENST00000495039 PTGR1Q14914 329 aa4.7□□□□□ -1.66
VPS50-219ENST00000495039 SPATA2LQ8IUW3 424 aaPredicted RBP4.7□□□□□ -1.66
VPS50-219ENST00000495039 FOXP4Q8IVH2 680 aaPredicted RBP4.7□□□□□ -1.66
VPS50-219ENST00000495039 METTL25Q8N6Q8 603 aa4.7□□□□□ -1.66
VPS50-219ENST00000495039 MAML1Q92585 1016 aa4.7□□□□□ -1.66
VPS50-219ENST00000495039 MED30Q96HR3 178 aa4.7□□□□□ -1.66
VPS50-219ENST00000495039 RBM38Q9H0Z9 239 aaKnown RBP4.7□□□□□ -1.66
VPS50-219ENST00000495039 AGO4Q9HCK5 861 aaKnown RBP4.7□□□□□ -1.66
VPS50-219ENST00000495039 MLXIPLQ9NP71 852 aa4.7□□□□□ -1.66
VPS50-219ENST00000495039 SEMA5BQ9P283 1151 aa4.7□□□□□ -1.66
VPS50-219ENST00000495039 PCDHA7Q9UN72 937 aa4.7□□□□□ -1.66
VPS50-219ENST00000495039 NOP58Q9Y2X3 529 aaKnown RBP4.7□□□□□ -1.66
VPS50-219ENST00000495039 hCG_2014768A0A024R1R8 64 aa4.69□□□□□ -1.66
VPS50-219ENST00000495039 AGPSO00116 658 aa4.69□□□□□ -1.66
VPS50-219ENST00000495039 MARCH6O60337 910 aa4.69□□□□□ -1.66
VPS50-219ENST00000495039 RASSF9O75901 435 aa4.69□□□□□ -1.66
VPS50-219ENST00000495039 UBXN7O94888 489 aa4.69□□□□□ -1.66
VPS50-219ENST00000495039 GAS8-AS1O95177 125 aa4.69□□□□□ -1.66
VPS50-219ENST00000495039 PF4V1P10720 104 aa4.69□□□□□ -1.66
VPS50-219ENST00000495039 KLRC1P26715 233 aa4.69□□□□□ -1.66
VPS50-219ENST00000495039 ANAPC15P60006 121 aa4.69□□□□□ -1.66
VPS50-219ENST00000495039 WDR5P61964 334 aaKnown RBP4.69□□□□□ -1.66
VPS50-219ENST00000495039 MTA1Q13330 715 aa4.69□□□□□ -1.66
VPS50-219ENST00000495039 ARHGEF7Q14155 803 aa4.69□□□□□ -1.66
VPS50-219ENST00000495039 NFATC4Q14934 902 aa4.69□□□□□ -1.66
VPS50-219ENST00000495039 RBM44Q6ZP01 1051 aaKnown RBP4.69□□□□□ -1.66
VPS50-219ENST00000495039 ARHGAP30Q7Z6I6 1101 aaPredicted RBP4.69□□□□□ -1.66
VPS50-219ENST00000495039 TFAP2DQ7Z6R9 452 aa4.69□□□□□ -1.66
VPS50-219ENST00000495039 NR2C2APQ86WQ0 139 aa4.69□□□□□ -1.66
VPS50-219ENST00000495039 C11orf44Q8N8P7 122 aa4.69□□□□□ -1.66
VPS50-219ENST00000495039 NUDCD2Q8WVJ2 157 aa4.69□□□□□ -1.66
VPS50-219ENST00000495039 GPATCH3Q96I76 525 aa4.69□□□□□ -1.66
VPS50-219ENST00000495039 DHX36Q9H2U1 1008 aaKnown RBP4.69□□□□□ -1.66
VPS50-219ENST00000495039 FZD3Q9NPG1 666 aa4.69□□□□□ -1.66
VPS50-219ENST00000495039 ANAPC4Q9UJX5 808 aa4.69□□□□□ -1.66
VPS50-219ENST00000495039 TRBV5-3A0A0A0MS03 114 aa4.68□□□□□ -1.66
VPS50-219ENST00000495039 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms