RNA–Protein interactions for RNA: ENST00000491581.5

HDAC3-211, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 777 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-211ENST00000491581 EDEM1Q92611 657 aa9.38□□□□□ -0.91
HDAC3-211ENST00000491581 PIGKQ92643 395 aa9.38□□□□□ -0.91
HDAC3-211ENST00000491581 TAF4BQ92750 862 aa9.38□□□□□ -0.91
HDAC3-211ENST00000491581 RTKNQ9BST9 563 aa9.38□□□□□ -0.91
HDAC3-211ENST00000491581 BBS2Q9BXC9 721 aa9.38□□□□□ -0.91
HDAC3-211ENST00000491581 CD248Q9HCU0 757 aa9.38□□□□□ -0.91
HDAC3-211ENST00000491581 TLR8Q9NR97 1041 aaKnown RBP9.38□□□□□ -0.91
HDAC3-211ENST00000491581 RAB20Q9NX57 234 aa9.38□□□□□ -0.91
HDAC3-211ENST00000491581 CACNA2D2Q9NY47 1150 aa9.38□□□□□ -0.91
HDAC3-211ENST00000491581 EBF1Q9UH73 591 aa9.38□□□□□ -0.91
HDAC3-211ENST00000491581 MAN1B1Q9UKM7 699 aa9.38□□□□□ -0.91
HDAC3-211ENST00000491581 RALYQ9UKM9 306 aaKnown RBP9.38□□□□□ -0.91
HDAC3-211ENST00000491581 SCML2Q9UQR0 700 aa9.38□□□□□ -0.91
HDAC3-211ENST00000491581 HOXC11O43248 304 aaPredicted RBP9.37□□□□□ -0.91
HDAC3-211ENST00000491581 MSI1O43347 362 aaKnown RBP9.37□□□□□ -0.91
HDAC3-211ENST00000491581 TSPAN3O60637 253 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 CAVIN2O95810 425 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 ADRB1P08588 477 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 CISD3P0C7P0 127 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 P4HA1P13674 534 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 ITPKAP23677 461 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 ATP5C1P36542 298 aaKnown RBP9.37□□□□□ -0.91
HDAC3-211ENST00000491581 PPP3CCP48454 512 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 RGS7P49802 495 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 PDE6CP51160 858 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 STX17P56962 302 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 PDE4CQ08493 712 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 NFIL3Q16649 462 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 GEN1Q17RS7 908 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 MAP7D1Q3KQU3 841 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 KRT39Q6A163 491 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 KLHL10Q6JEL2 608 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 Q6ZNB5 142 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 HTR3DQ70Z44 454 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 ARHGEF19Q8IW93 802 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 GPR161Q8N6U8 529 aaKnown RBP9.37□□□□□ -0.91
HDAC3-211ENST00000491581 ZNF366Q8N895 744 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 OLIG1Q8TAK6 271 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 OVCA2Q8WZ82 227 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 SLC39A7Q92504 469 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 ACDQ96AP0 544 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 MYEOVQ96EZ4 313 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 TMEM176AQ96HP8 235 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 CNOT6LQ96LI5 555 aaKnown RBP9.37□□□□□ -0.91
HDAC3-211ENST00000491581 CEP295NLQ96MC4 621 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 DUSP9Q99956 384 aaKnown RBP9.37□□□□□ -0.91
HDAC3-211ENST00000491581 EDEM2Q9BV94 578 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 DUSP16Q9BY84 665 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 ULBP1Q9BZM6 244 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 SCAND2PQ9GZW5 306 aaPredicted RBP9.37□□□□□ -0.91
HDAC3-211ENST00000491581 ACP6Q9NPH0 428 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 CYLDQ9NQC7 956 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 EHD2Q9NZN4 543 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 CALCOCO1Q9P1Z2 691 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 BCCIPQ9P287 314 aaKnown RBP eCLIP9.37□□□□□ -0.91
HDAC3-211ENST00000491581 SFMBT1Q9UHJ3 866 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 PCDH15Q96QU1 1955 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 CACNA1AO00555 2505 aa9.37□□□□□ -0.91
HDAC3-211ENST00000491581 A0A0A0MRY4 1105 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 CCDC163A0A0D9SF12 145 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 CDX4O14627 284 aaPredicted RBP9.36□□□□□ -0.91
HDAC3-211ENST00000491581 SLC9A3R1O14745 358 aaPredicted RBP9.36□□□□□ -0.91
HDAC3-211ENST00000491581 MAPK13O15264 365 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 LRP3O75074 770 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 MYL1P05976 194 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 C7P10643 843 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 HOXB2P14652 356 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 PFKLP17858 780 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 NDUFV2P19404 249 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 MAOBP27338 520 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 CORO1AP31146 461 aaKnown RBP9.36□□□□□ -0.91
HDAC3-211ENST00000491581 P2RY2P41231 377 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 GRIA2P42262 883 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 MAPK8P45983 427 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 TUBP50607 506 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 TKTL1P51854 596 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 MRPS21P82921 87 aaKnown RBP9.36□□□□□ -0.91
HDAC3-211ENST00000491581 UAP1L1Q3KQV9 507 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 ZNF658Q5TYW1 1059 aaPredicted RBP9.36□□□□□ -0.91
HDAC3-211ENST00000491581 FYB2Q5VWT5 728 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 TMEM215Q68D42 235 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 RNF43Q68DV7 783 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 GRAMD4Q6IC98 578 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 PSAPL1Q6NUJ1 521 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 DENND1CQ8IV53 801 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 SLC41A1Q8IVJ1 513 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 ZC3H3Q8IXZ2 948 aaKnown RBP9.36□□□□□ -0.91
HDAC3-211ENST00000491581 UBR7Q8N806 425 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 FBXL13Q8NEE6 735 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 SLC35C1Q96A29 364 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 IMPG2Q9BZV3 1241 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 MTG2Q9H4K7 406 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 FBXO44Q9H4M3 255 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 CYP3A43Q9HB55 503 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 TBC1D14Q9P2M4 693 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 DEC1Q9P2X7 70 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 TSPAN16Q9UKR8 245 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 AGO1Q9UL18 857 aaKnown RBP9.36□□□□□ -0.91
HDAC3-211ENST00000491581 CYP8B1Q9UNU6 501 aa9.36□□□□□ -0.91
HDAC3-211ENST00000491581 USP3Q9Y6I4 520 aa9.36□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms