RNA–Protein interactions for RNA: ENST00000479656.5

APTX-223, Transcript of aprataxin, human

TSL 1 (best)

Gene APTX, Length 1,881 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
APTX-223	ENST00000479656	ERMARD	Q5T6L9	678 aa		11.69	□□□□□ -0.54
APTX-223	ENST00000479656	SPOCD1	Q6ZMY3	1216 aa		11.69	□□□□□ -0.54
APTX-223	ENST00000479656	KLHL7	Q8IXQ5	586 aa		11.69	□□□□□ -0.54
APTX-223	ENST00000479656	MMGT1	Q8N4V1	131 aa		11.69	□□□□□ -0.54
APTX-223	ENST00000479656	FBXO32	Q969P5	355 aa		11.69	□□□□□ -0.54
APTX-223	ENST00000479656	SNRNP25	Q9BV90	132 aa	Known RBP	11.69	□□□□□ -0.54
APTX-223	ENST00000479656	ENTPD7	Q9NQZ7	604 aa		11.69	□□□□□ -0.54
APTX-223	ENST00000479656	PIGV	Q9NUD9	493 aa		11.69	□□□□□ -0.54
APTX-223	ENST00000479656	GMIP	Q9P107	970 aa		11.69	□□□□□ -0.54
APTX-223	ENST00000479656	HSFX1	Q9UBD0	423 aa		11.69	□□□□□ -0.54
APTX-223	ENST00000479656	NUDT5	Q9UKK9	219 aa		11.69	□□□□□ -0.54
APTX-223	ENST00000479656	RWDD3	Q9Y3V2	267 aa		11.69	□□□□□ -0.54
APTX-223	ENST00000479656	PATJ	Q8NI35	1801 aa		11.69	□□□□□ -0.54
APTX-223	ENST00000479656	FAM92A	A1XBS5	289 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	PRRG1	O14668	218 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	RHOXF2B	P0C7M4	288 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	RDX	P35241	583 aa	Known RBP	11.68	□□□□□ -0.54
APTX-223	ENST00000479656	CDKN2B	P42772	138 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	ALDH1A3	P47895	512 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	CDH6	P55285	790 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	COPS2	P61201	443 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	CREM	Q03060	361 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	ADCY2	Q08462	1091 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	ELF2	Q15723	593 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	BEND5	Q7L4P6	421 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	TNS4	Q8IZW8	715 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	CCDC185	Q8N715	623 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	MICAL1	Q8TDZ2	1067 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	KLHL5	Q96PQ7	755 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	KRT12	Q99456	494 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	RHOXF2	Q9BQY4	288 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	LRRC1	Q9BTT6	524 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	UBE2O	Q9C0C9	1292 aa	Known RBP	11.68	□□□□□ -0.54
APTX-223	ENST00000479656	TMPRSS4	Q9NRS4	437 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	STAU2	Q9NUL3	570 aa	Known RBP eCLIP	11.68	□□□□□ -0.54
APTX-223	ENST00000479656	COMMD8	Q9NX08	183 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	DDIT4	Q9NX09	232 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	RRN3	Q9NYV6	651 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	FAM120A	Q9NZB2	1118 aa	Known RBP eCLIP	11.68	□□□□□ -0.54
APTX-223	ENST00000479656	LZTS1	Q9Y250	596 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	PLXNA4	Q9HCM2	1894 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	HIDE1	A8MVS5	230 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	C5orf67	F2Z3F1	127 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	GRM6	O15303	877 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	TGM5	O43548	720 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	PBX2	P40425	430 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	ARSE	P51690	589 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	TUBB4B	P68371	445 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	SIX1	Q15475	284 aa	Predicted RBP	11.68	□□□□□ -0.54
APTX-223	ENST00000479656	TFDP3	Q5H9I0	405 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	PLPP4	Q5VZY2	271 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	TAC4	Q86UU9	113 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	PRELID2	Q8N945	189 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	MRPL43	Q8N983	215 aa	Known RBP	11.68	□□□□□ -0.54
APTX-223	ENST00000479656	DQX1	Q8TE96	717 aa	Known RBP	11.68	□□□□□ -0.54
APTX-223	ENST00000479656	TEKT4	Q8WW24	435 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	PGAP3	Q96FM1	320 aa	Predicted RBP	11.68	□□□□□ -0.54
APTX-223	ENST00000479656	TRIM62	Q9BVG3	475 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	CALN1	Q9BXU9	219 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	DDX47	Q9H0S4	455 aa	Known RBP	11.68	□□□□□ -0.54
APTX-223	ENST00000479656	FAM204A	Q9H8W3	233 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	WDR6	Q9NNW5	1121 aa	Known RBP	11.68	□□□□□ -0.54
APTX-223	ENST00000479656	SFMBT1	Q9UHJ3	866 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	FZD10	Q9ULW2	581 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	YBX2	Q9Y2T7	364 aa	Known RBP	11.68	□□□□□ -0.54
APTX-223	ENST00000479656	YIPF1	Q9Y548	306 aa		11.68	□□□□□ -0.54
APTX-223	ENST00000479656	LAMA2	P24043	3122 aa	Known RBP	11.67	□□□□□ -0.54
APTX-223	ENST00000479656	hCG_1818297	A0A087WSY0	165 aa		11.67	□□□□□ -0.54
APTX-223	ENST00000479656	CCDC188	H7C350	402 aa		11.67	□□□□□ -0.54
APTX-223	ENST00000479656	MDM4	O15151	490 aa		11.67	□□□□□ -0.54
APTX-223	ENST00000479656	F9	P00740	461 aa		11.67	□□□□□ -0.54
APTX-223	ENST00000479656	RB1	P06400	928 aa		11.67	□□□□□ -0.54
APTX-223	ENST00000479656	KLRC2	P26717	231 aa		11.67	□□□□□ -0.54
APTX-223	ENST00000479656	TWF1	Q12792	350 aa		11.67	□□□□□ -0.54
APTX-223	ENST00000479656	MMRN1	Q13201	1228 aa		11.67	□□□□□ -0.54
APTX-223	ENST00000479656	KLF1	Q13351	362 aa	Predicted RBP	11.67	□□□□□ -0.54
APTX-223	ENST00000479656	KRT81	Q14533	505 aa		11.67	□□□□□ -0.54
APTX-223	ENST00000479656	TCEAL8	Q8IYN2	117 aa		11.67	□□□□□ -0.54
APTX-223	ENST00000479656	PYROXD2	Q8N2H3	581 aa		11.67	□□□□□ -0.54
APTX-223	ENST00000479656	ARHGAP18	Q8N392	663 aa		11.67	□□□□□ -0.54
APTX-223	ENST00000479656	RNF139	Q8WU17	664 aa		11.67	□□□□□ -0.54
APTX-223	ENST00000479656	CASP10	Q92851	521 aa		11.67	□□□□□ -0.54
APTX-223	ENST00000479656	CEP295NL	Q96MC4	621 aa		11.67	□□□□□ -0.54
APTX-223	ENST00000479656	GDF15	Q99988	308 aa		11.67	□□□□□ -0.54
APTX-223	ENST00000479656	HINFP	Q9BQA5	517 aa		11.67	□□□□□ -0.54
APTX-223	ENST00000479656	EMILIN2	Q9BXX0	1053 aa		11.67	□□□□□ -0.54
APTX-223	ENST00000479656	PLEKHA4	Q9H4M7	779 aa		11.67	□□□□□ -0.54
APTX-223	ENST00000479656	DHX35	Q9H5Z1	703 aa	Known RBP	11.67	□□□□□ -0.54
APTX-223	ENST00000479656	TLR9	Q9NR96	1032 aa		11.67	□□□□□ -0.54
APTX-223	ENST00000479656	TLR8	Q9NR97	1041 aa	Known RBP	11.67	□□□□□ -0.54
APTX-223	ENST00000479656	FBXW11	Q9UKB1	542 aa		11.67	□□□□□ -0.54
APTX-223	ENST00000479656	AP4E1	Q9UPM8	1137 aa		11.67	□□□□□ -0.54
APTX-223	ENST00000479656	PCDHA11	Q9Y5I1	949 aa		11.67	□□□□□ -0.54
APTX-223	ENST00000479656	IRAK3	Q9Y616	596 aa		11.67	□□□□□ -0.54
APTX-223	ENST00000479656	GOLGA6L10	A0A0M3HER8	536 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	C2orf71	A6NGG8	1288 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	TJP3	O95049	919 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	ADH1A	P07327	375 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	CSH1	P0DML2	217 aa		11.66	□□□□□ -0.54
APTX-223	ENST00000479656	CSH2	P0DML3	217 aa		11.66	□□□□□ -0.54

Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms