RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 PYM1Q9BRP8 204 aaKnown RBP8.57□□□□□ -1.04
USP54-211ENST00000474929 C17orf75Q9HAS0 396 aa8.57□□□□□ -1.04
USP54-211ENST00000474929 SMPD4Q9NXE4 827 aa8.57□□□□□ -1.04
USP54-211ENST00000474929 ACSL6Q9UKU0 697 aa8.57□□□□□ -1.04
USP54-211ENST00000474929 HCN2Q9UL51 889 aa8.57□□□□□ -1.04
USP54-211ENST00000474929 BRPF3Q9ULD4 1205 aa8.57□□□□□ -1.04
USP54-211ENST00000474929 DERAQ9Y315 318 aa8.57□□□□□ -1.04
USP54-211ENST00000474929 CKAP5Q14008 2032 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 NEDD8-MDP1E9PL57 170 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 ABLIM1O14639 778 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 SLC27A2O14975 620 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 CLDN3O15551 220 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 TRAK2O60296 914 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 HMGB1P09429 215 aaKnown RBP8.56□□□□□ -1.04
USP54-211ENST00000474929 LIPCP11150 499 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 IFNAR1P17181 557 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 MUTP22033 750 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 CD38P28907 300 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 PCSK1P29120 753 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 PNPLA4P41247 253 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 MCL1Q07820 350 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 GOLGA8FQ08AF8 430 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 GOLGA8DPQ0D2H9 430 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 KCNAB2Q13303 367 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 PDIA5Q14554 519 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 MAPRE1Q15691 268 aaKnown RBP8.56□□□□□ -1.04
USP54-211ENST00000474929 TBR1Q16650 682 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 ISXQ2M1V0 245 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 INTS6LQ5JSJ4 861 aaKnown RBP8.56□□□□□ -1.04
USP54-211ENST00000474929 SDHAF4Q5VUM1 108 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 C9orf57Q5W0N0 161 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 KIAA0895LQ68EN5 471 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 FAM124AQ86V42 546 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 SLC34A3Q8N130 599 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 TMEM86AQ8N2M4 240 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 OR2T3Q8NH03 318 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 TPCN2Q8NHX9 752 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 WDR36Q8NI36 951 aaKnown RBP8.56□□□□□ -1.04
USP54-211ENST00000474929 WDR48Q8TAF3 677 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 GOLGA1Q92805 767 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 MIB2Q96AX9 1013 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 TARS2Q9BW92 718 aaKnown RBP8.56□□□□□ -1.04
USP54-211ENST00000474929 TTLL2Q9BWV7 592 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 BBS2Q9BXC9 721 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 SLC26A6Q9BXS9 759 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 AASDHPPTQ9NRN7 309 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 WDR70Q9NW82 654 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 NCKIPSDQ9NZQ3 722 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 ARHGAP28Q9P2N2 729 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 THAP10Q9P2Z0 257 aaPredicted RBP8.56□□□□□ -1.04
USP54-211ENST00000474929 PCDHGA7Q9Y5G6 932 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 TCHHQ07283 1943 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 LRRK1Q38SD2 2015 aa8.56□□□□□ -1.04
USP54-211ENST00000474929 PTPRJQ12913 1337 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 MYOFQ9NZM1 2061 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 ZNF840PA6NDX5 716 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 CCDC169A6NNP5 214 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 PRRT4C9JH25 899 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 VPS4BO75351 444 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 TCEA3O75764 348 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 DNTTP04053 509 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 C7P10643 843 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 CKMT1AP12532 417 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 TYRP14679 529 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 CYP2F1P24903 491 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 CHMLP26374 656 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 GRNP28799 593 aaKnown RBP8.55□□□□□ -1.04
USP54-211ENST00000474929 ACSL1P33121 698 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 MATR3P43243 847 aaKnown RBP eCLIP8.55□□□□□ -1.04
USP54-211ENST00000474929 HARS2P49590 506 aaKnown RBP8.55□□□□□ -1.04
USP54-211ENST00000474929 COPAP53621 1224 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 NXPH1P58417 271 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 OVGP1Q12889 678 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 EIF3IQ13347 325 aaKnown RBP8.55□□□□□ -1.04
USP54-211ENST00000474929 SHBQ15464 509 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 DCAF6Q58WW2 860 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 KCNT1Q5JUK3 1230 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 MANEAQ5SRI9 462 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 ZNF787Q6DD87 383 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 BORAQ6PGQ7 559 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 C14orf80Q86SX3 495 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 PTRH1Q86Y79 214 aaKnown RBP8.55□□□□□ -1.04
USP54-211ENST00000474929 SCN4BQ8IWT1 228 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 OR4C6Q8NH72 309 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 ERMNQ8TAM6 284 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 OVCA2Q8WZ82 227 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 KMT5AQ9NQR1 393 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 LSM7Q9UK45 103 aaKnown RBP8.55□□□□□ -1.04
USP54-211ENST00000474929 SCML1Q9UN30 329 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 VPS4AQ9UN37 437 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 NCKAP1Q9Y2A7 1128 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 SLC27A6Q9Y2P4 619 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 PCDHGA4Q9Y5G9 962 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 SLCO1B1Q9Y6L6 691 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 CSMD1Q96PZ7 3565 aa8.55□□□□□ -1.04
USP54-211ENST00000474929 RP1L1Q8IWN7 2480 aaPredicted RBP8.54□□□□□ -1.04
USP54-211ENST00000474929 CCDC187A0A096LP49 1063 aa8.54□□□□□ -1.04
USP54-211ENST00000474929 A0A1B0GTL3 188 aa8.54□□□□□ -1.04
USP54-211ENST00000474929 H0YCG3 227 aa8.54□□□□□ -1.04
USP54-211ENST00000474929 PIRO00625 290 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms