RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 ALLCQ8N6M5 410 aa16.53■□□□□ 0.24
CCDC88B-205ENST00000472524 TPSD1Q9BZJ3 242 aa16.53■□□□□ 0.24
CCDC88B-205ENST00000472524 FAM124BQ9H5Z6 455 aaPredicted RBP16.53■□□□□ 0.24
CCDC88B-205ENST00000472524 ZDHHC4Q9NPG8 344 aa16.53■□□□□ 0.24
CCDC88B-205ENST00000472524 EBF1Q9UH73 591 aa16.53■□□□□ 0.24
CCDC88B-205ENST00000472524 RASAL2Q9UJF2 1139 aa16.53■□□□□ 0.24
CCDC88B-205ENST00000472524 DNMT3LQ9UJW3 386 aa16.53■□□□□ 0.24
CCDC88B-205ENST00000472524 MMP17Q9ULZ9 603 aa16.53■□□□□ 0.24
CCDC88B-205ENST00000472524 USP3Q9Y6I4 520 aa16.53■□□□□ 0.24
CCDC88B-205ENST00000472524 GON4LQ3T8J9 2241 aa16.53■□□□□ 0.24
CCDC88B-205ENST00000472524 PPP1R3GB7ZBB8 358 aa16.52■□□□□ 0.24
CCDC88B-205ENST00000472524 TULP3O75386 442 aa16.52■□□□□ 0.24
CCDC88B-205ENST00000472524 KLF8O95600 359 aaPredicted RBP16.52■□□□□ 0.24
CCDC88B-205ENST00000472524 RALAP11233 206 aa16.52■□□□□ 0.24
CCDC88B-205ENST00000472524 GRIA2P42262 883 aa16.52■□□□□ 0.24
CCDC88B-205ENST00000472524 PSEN1P49768 467 aa16.52■□□□□ 0.24
CCDC88B-205ENST00000472524 SLC8A3P57103 927 aa16.52■□□□□ 0.24
CCDC88B-205ENST00000472524 MRPS21P82921 87 aaKnown RBP16.52■□□□□ 0.24
CCDC88B-205ENST00000472524 MORC3Q14149 939 aa16.52■□□□□ 0.24
CCDC88B-205ENST00000472524 SGO2Q562F6 1265 aa16.52■□□□□ 0.24
CCDC88B-205ENST00000472524 EMC10Q5UCC4 262 aa16.52■□□□□ 0.24
CCDC88B-205ENST00000472524 ANO7Q6IWH7 933 aa16.52■□□□□ 0.24
CCDC88B-205ENST00000472524 KLHDC10Q6PID8 442 aa16.52■□□□□ 0.24
CCDC88B-205ENST00000472524 TPGS1Q6ZTW0 290 aa16.52■□□□□ 0.24
CCDC88B-205ENST00000472524 TADA2BQ86TJ2 420 aa16.52■□□□□ 0.24
CCDC88B-205ENST00000472524 ETFBKMTQ8IXQ9 262 aa16.52■□□□□ 0.24
CCDC88B-205ENST00000472524 ANKRD52Q8NB46 1076 aa16.52■□□□□ 0.24
CCDC88B-205ENST00000472524 TXNDC5Q8NBS9 432 aaKnown RBP16.52■□□□□ 0.24
CCDC88B-205ENST00000472524 VPS45Q9NRW7 570 aa16.52■□□□□ 0.24
CCDC88B-205ENST00000472524 DEC1Q9P2X7 70 aa16.52■□□□□ 0.24
CCDC88B-205ENST00000472524 TSPAN16Q9UKR8 245 aa16.52■□□□□ 0.24
CCDC88B-205ENST00000472524 CIZ1Q9ULV3 898 aaPredicted RBP16.52■□□□□ 0.24
CCDC88B-205ENST00000472524 PLXND1Q9Y4D7 1925 aa16.52■□□□□ 0.23
CCDC88B-205ENST00000472524 CHD8Q9HCK8 2581 aa16.52■□□□□ 0.23
CCDC88B-205ENST00000472524 CACNA1BQ00975 2339 aa16.51■□□□□ 0.23
CCDC88B-205ENST00000472524 BICDL2A1A5D9 508 aa16.51■□□□□ 0.23
CCDC88B-205ENST00000472524 TBC1D3BA6NDS4 549 aa16.51■□□□□ 0.23
CCDC88B-205ENST00000472524 NEDD8-MDP1E9PL57 170 aa16.51■□□□□ 0.23
CCDC88B-205ENST00000472524 TULP2O00295 520 aa16.51■□□□□ 0.23
CCDC88B-205ENST00000472524 TRIM24O15164 1050 aa16.51■□□□□ 0.23
CCDC88B-205ENST00000472524 GREM1O60565 184 aa16.51■□□□□ 0.23
CCDC88B-205ENST00000472524 HMBSP08397 361 aa16.51■□□□□ 0.23
CCDC88B-205ENST00000472524 TBXAS1P24557 533 aaPredicted RBP16.51■□□□□ 0.23
CCDC88B-205ENST00000472524 PMLP29590 882 aa16.51■□□□□ 0.23
CCDC88B-205ENST00000472524 PLA2G4AP47712 749 aa16.51■□□□□ 0.23
CCDC88B-205ENST00000472524 BCAT1P54687 386 aa16.51■□□□□ 0.23
CCDC88B-205ENST00000472524 CREB5Q02930 508 aa16.51■□□□□ 0.23
CCDC88B-205ENST00000472524 EFEMP1Q12805 493 aa16.51■□□□□ 0.23
CCDC88B-205ENST00000472524 ELF2Q15723 593 aa16.51■□□□□ 0.23
CCDC88B-205ENST00000472524 TMEM92Q6UXU6 159 aa16.51■□□□□ 0.23
CCDC88B-205ENST00000472524 PHTF2Q8N3S3 785 aa16.51■□□□□ 0.23
CCDC88B-205ENST00000472524 IL17RCQ8NAC3 791 aa16.51■□□□□ 0.23
CCDC88B-205ENST00000472524 NT5C1BQ96P26 610 aa16.51■□□□□ 0.23
CCDC88B-205ENST00000472524 BBS2Q9BXC9 721 aa16.51■□□□□ 0.23
CCDC88B-205ENST00000472524 DNAJC17Q9NVM6 304 aaKnown RBP16.51■□□□□ 0.23
CCDC88B-205ENST00000472524 CLIC5Q9NZA1 410 aa16.51■□□□□ 0.23
CCDC88B-205ENST00000472524 HESX1Q9UBX0 185 aa16.51■□□□□ 0.23
CCDC88B-205ENST00000472524 PI4KAP42356 2102 aa16.51■□□□□ 0.23
CCDC88B-205ENST00000472524 SGK1O00141 431 aa16.5■□□□□ 0.23
CCDC88B-205ENST00000472524 STC2O76061 302 aa16.5■□□□□ 0.23
CCDC88B-205ENST00000472524 RHOBTB1O94844 696 aa16.5■□□□□ 0.23
CCDC88B-205ENST00000472524 CAVIN2O95810 425 aa16.5■□□□□ 0.23
CCDC88B-205ENST00000472524 HNRNPLP14866 589 aaKnown RBP eCLIP16.5■□□□□ 0.23
CCDC88B-205ENST00000472524 GBP1P32455 592 aa16.5■□□□□ 0.23
CCDC88B-205ENST00000472524 TNFRSF4P43489 277 aa16.5■□□□□ 0.23
CCDC88B-205ENST00000472524 KIR2DL1P43626 348 aaPredicted RBP16.5■□□□□ 0.23
CCDC88B-205ENST00000472524 TKTL1P51854 596 aa16.5■□□□□ 0.23
CCDC88B-205ENST00000472524 PDE4CQ08493 712 aa16.5■□□□□ 0.23
CCDC88B-205ENST00000472524 PAK1Q13153 545 aa16.5■□□□□ 0.23
CCDC88B-205ENST00000472524 CRY1Q16526 586 aa16.5■□□□□ 0.23
CCDC88B-205ENST00000472524 PREPLQ4J6C6 727 aaPredicted RBP16.5■□□□□ 0.23
CCDC88B-205ENST00000472524 RAB41Q5JT25 222 aa16.5■□□□□ 0.23
CCDC88B-205ENST00000472524 RNF43Q68DV7 783 aa16.5■□□□□ 0.23
CCDC88B-205ENST00000472524 GRAMD4Q6IC98 578 aa16.5■□□□□ 0.23
CCDC88B-205ENST00000472524 ARHGAP18Q8N392 663 aa16.5■□□□□ 0.23
CCDC88B-205ENST00000472524 PPM1KQ8N3J5 372 aa16.5■□□□□ 0.23
CCDC88B-205ENST00000472524 UBR7Q8N806 425 aa16.5■□□□□ 0.23
CCDC88B-205ENST00000472524 TERB1Q8NA31 727 aa16.5■□□□□ 0.23
CCDC88B-205ENST00000472524 UBA3Q8TBC4 463 aa16.5■□□□□ 0.23
CCDC88B-205ENST00000472524 NDRG1Q92597 394 aaKnown RBP16.5■□□□□ 0.23
CCDC88B-205ENST00000472524 BHMTQ93088 406 aa16.5■□□□□ 0.23
CCDC88B-205ENST00000472524 XPO6Q96QU8 1125 aaKnown RBP16.5■□□□□ 0.23
CCDC88B-205ENST00000472524 CDK5RAP1Q96SZ6 601 aaKnown RBP16.5■□□□□ 0.23
CCDC88B-205ENST00000472524 LSM14BQ9BX40 385 aaKnown RBP16.5■□□□□ 0.23
CCDC88B-205ENST00000472524 ULBP1Q9BZM6 244 aa16.5■□□□□ 0.23
CCDC88B-205ENST00000472524 UBXN6Q9BZV1 441 aa16.5■□□□□ 0.23
CCDC88B-205ENST00000472524 ANGPTL2Q9UKU9 493 aa16.5■□□□□ 0.23
CCDC88B-205ENST00000472524 PCDHB4Q9Y5E5 795 aa16.5■□□□□ 0.23
CCDC88B-205ENST00000472524 LAMA1P25391 3075 aa16.49■□□□□ 0.23
CCDC88B-205ENST00000472524 BCLAF3A2AJT9 711 aaKnown RBP16.49■□□□□ 0.23
CCDC88B-205ENST00000472524 XPO1O14980 1071 aaKnown RBP16.49■□□□□ 0.23
CCDC88B-205ENST00000472524 CHRM1P11229 460 aaPredicted RBP16.49■□□□□ 0.23
CCDC88B-205ENST00000472524 VDRP11473 427 aa16.49■□□□□ 0.23
CCDC88B-205ENST00000472524 TYRP14679 529 aa16.49■□□□□ 0.23
CCDC88B-205ENST00000472524 BCKDHBP21953 392 aa16.49■□□□□ 0.23
CCDC88B-205ENST00000472524 YWHAGP61981 247 aaKnown RBP eCLIP16.49■□□□□ 0.23
CCDC88B-205ENST00000472524 BST2Q10589 180 aaKnown RBP16.49■□□□□ 0.23
CCDC88B-205ENST00000472524 CETN1Q12798 172 aa16.49■□□□□ 0.23
CCDC88B-205ENST00000472524 EOGTQ5NDL2 527 aa16.49■□□□□ 0.23
CCDC88B-205ENST00000472524 C10orf76Q5T2E6 689 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms