RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 RAB1AP62820 205 aa4.85□□□□□ -1.63
VPS13A-210ENST00000471439 NKX6-1P78426 367 aaPredicted RBP4.85□□□□□ -1.63
VPS13A-210ENST00000471439 HSD11B2P80365 405 aa4.85□□□□□ -1.63
VPS13A-210ENST00000471439 RHDQ02161 417 aa4.85□□□□□ -1.63
VPS13A-210ENST00000471439 SRSF1Q07955 248 aaKnown RBP eCLIP4.85□□□□□ -1.63
VPS13A-210ENST00000471439 PLS1Q14651 629 aa4.85□□□□□ -1.63
VPS13A-210ENST00000471439 HLFQ16534 295 aa4.85□□□□□ -1.63
VPS13A-210ENST00000471439 SMN1Q16637 294 aaKnown RBP4.85□□□□□ -1.63
VPS13A-210ENST00000471439 GADL1Q6ZQY3 521 aa4.85□□□□□ -1.63
VPS13A-210ENST00000471439 MAPKAPK5Q8IW41 473 aa4.85□□□□□ -1.63
VPS13A-210ENST00000471439 KIAA0319LQ8IZA0 1049 aa4.85□□□□□ -1.63
VPS13A-210ENST00000471439 C3orf20Q8ND61 904 aa4.85□□□□□ -1.63
VPS13A-210ENST00000471439 CASKIN2Q8WXE0 1202 aa4.85□□□□□ -1.63
VPS13A-210ENST00000471439 CYFIP2Q96F07 1278 aa4.85□□□□□ -1.63
VPS13A-210ENST00000471439 C1orf43Q9BWL3 253 aa4.85□□□□□ -1.63
VPS13A-210ENST00000471439 TMEM60Q9H2L4 133 aa4.85□□□□□ -1.63
VPS13A-210ENST00000471439 BHMT2Q9H2M3 363 aa4.85□□□□□ -1.63
VPS13A-210ENST00000471439 LMBRD1Q9NUN5 540 aa4.85□□□□□ -1.63
VPS13A-210ENST00000471439 TMEM140Q9NV12 185 aa4.85□□□□□ -1.63
VPS13A-210ENST00000471439 PCDHGB6Q9Y5F9 930 aa4.85□□□□□ -1.63
VPS13A-210ENST00000471439 NUP98P52948 1817 aa4.85□□□□□ -1.63
VPS13A-210ENST00000471439 AKAP13Q12802 2813 aa4.85□□□□□ -1.63
VPS13A-210ENST00000471439 NBPF19A0A087WUL8 3843 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 ANKRD36CQ5JPF3 1778 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 A0A1B0GTW7 788 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 GAGE12BA1L429 117 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 GAGE12HA6NDE8 117 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 FAM227AF5H4B4 570 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 F2RL2O00254 374 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 KIAA0355O15063 1070 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 KIAA0391O15091 583 aaKnown RBP4.84□□□□□ -1.63
VPS13A-210ENST00000471439 CAND2O75155 1236 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 PDGFBP01127 241 aaPredicted RBP4.84□□□□□ -1.63
VPS13A-210ENST00000471439 KRT18P05783 430 aaKnown RBP4.84□□□□□ -1.63
VPS13A-210ENST00000471439 TYRP14679 529 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 AGFG1P52594 562 aaKnown RBP4.84□□□□□ -1.63
VPS13A-210ENST00000471439 NANOS3P60323 173 aaKnown RBP4.84□□□□□ -1.63
VPS13A-210ENST00000471439 CTXN1P60606 82 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 NOMO3P69849 1222 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 GUCY1B3Q02153 619 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 TLE2Q04725 743 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 FOXI1Q12951 378 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 RAB39AQ14964 217 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 UBXN2BQ14CS0 331 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 FLYWCH1Q4VC44 716 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 PLEKHO1Q53GL0 409 aaPredicted RBP4.84□□□□□ -1.63
VPS13A-210ENST00000471439 CCDC157Q569K6 752 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 NOMO2Q5JPE7 1267 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 C1orf141Q5JVX7 400 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 GJC2Q5T442 439 aaPredicted RBP4.84□□□□□ -1.63
VPS13A-210ENST00000471439 CCDC149Q6ZUS6 474 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 SEM1Q6ZVN7 128 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 PPP1R3BQ86XI6 285 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 NACC2Q96BF6 587 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 SLC35A4Q96G79 324 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 ZBED3Q96IU2 234 aaPredicted RBP4.84□□□□□ -1.63
VPS13A-210ENST00000471439 BBC3Q96PG8 261 aaPredicted RBP4.84□□□□□ -1.63
VPS13A-210ENST00000471439 SARGQ9BW04 601 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 MXD3Q9BW11 206 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 PRDM13Q9H4Q3 707 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 ZMAT3Q9HA38 289 aaKnown RBP4.84□□□□□ -1.63
VPS13A-210ENST00000471439 ATP6V0A4Q9HBG4 840 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 KMT5AQ9NQR1 393 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 SYBUQ9NX95 663 aa4.84□□□□□ -1.63
VPS13A-210ENST00000471439 SETD2Q9BYW2 2564 aaPredicted RBP4.83□□□□□ -1.64
VPS13A-210ENST00000471439 RPAP1Q9BWH6 1393 aaPredicted RBP4.83□□□□□ -1.64
VPS13A-210ENST00000471439 H3BQ06 376 aaPredicted RBP4.83□□□□□ -1.64
VPS13A-210ENST00000471439 H3BUI4 141 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 GRM6O15303 877 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 SLC16A6O15403 523 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 CDKL5O76039 1030 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 ZBED1O96006 694 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 POMCP01189 267 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 AHSGP02765 367 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 CLTBP09497 229 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 SPATA31D3P0C874 917 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 ITGAMP11215 1152 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 SLC5A1P13866 664 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 TRIM27P14373 513 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 BMP5P22003 454 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 GCSHP23434 173 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 BMPR1AP36894 532 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 RIPPLY3P57055 190 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 SLFN5Q08AF3 891 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 SIGLEC14Q08ET2 396 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 CNN3Q15417 329 aaKnown RBP4.83□□□□□ -1.64
VPS13A-210ENST00000471439 ANO6Q4KMQ2 910 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 COBLL1Q53SF7 1204 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 CCSAPQ6IQ19 270 aaPredicted RBP4.83□□□□□ -1.64
VPS13A-210ENST00000471439 SPATA31D4Q6ZUB0 917 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 ZNF365Q70YC5 407 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 GPR149Q86SP6 731 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 DAAM2Q86T65 1068 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 CCAR1Q8IX12 1150 aaKnown RBP4.83□□□□□ -1.64
VPS13A-210ENST00000471439 SLC44A3Q8N4M1 653 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 RNF31Q96EP0 1072 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 CDK5RAP3Q96JB5 506 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 PARK7Q99497 189 aaKnown RBP4.83□□□□□ -1.64
VPS13A-210ENST00000471439 EYA3Q99504 573 aa4.83□□□□□ -1.64
VPS13A-210ENST00000471439 APOL5Q9BWW9 433 aa4.83□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms