RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 BTBD7Q9P203 1132 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 MEGF6O75095 1541 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 RBAK-RBAKDNI3L0D1 243 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 UBDO15205 165 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 SHBGP04278 402 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 NR2C2P49116 596 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 PTPN11Q06124 597 aaPredicted RBP19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 SNX17Q15036 470 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 PDK4Q16654 411 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 BBS7Q8IWZ6 715 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 CCDC33Q8N5R6 958 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 TRIM13O60858 407 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 SLC2A3P11169 496 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 FASP25445 335 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 SPANXN3Q5MJ09 141 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 CACHD1Q5VU97 1274 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 CROCCP3Q8IVE0 287 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 AGBL3Q8NEM8 1001 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 CPNE1Q99829 537 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 SH3GL1Q99961 368 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 PRDM16Q9HAZ2 1276 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 MYRFQ9Y2G1 1151 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 RIMBP3CA6NJZ7 1639 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 RIMBP3BA6NNM3 1639 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 RIMBP3Q9UFD9 1639 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 RGL2O15211 777 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 ADRA1DP25100 572 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 PARP6Q2NL67 630 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 THEMIS2Q5TEJ8 643 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 LRRC38Q5VT99 294 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 ANKRD13AQ8IZ07 590 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 LRRC71Q8N4P6 559 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 ZNF606Q8WXB4 792 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 RXFP2Q8WXD0 754 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 COPG2Q9UBF2 871 aa19.55■□□□□ 0.72
CCDC88B-204ENST00000463837 A0A1B0GW55 424 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 SLITRK3O94933 977 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 DLGAP3O95886 979 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 DUX4L2P0CJ85 424 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 DUX4L3P0CJ86 424 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 DUX4L4P0CJ87 422 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 DUX4L5P0CJ88 424 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 DUX4L6P0CJ89 424 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 DUX4L7P0CJ90 424 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 SSTR1P30872 391 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 MMP13P45452 471 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 RIPK1Q13546 671 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 KCTD10Q9H3F6 313 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 DUX4Q9UBX2 424 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 REXO2Q9Y3B8 237 aaKnown RBP19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 RAD54BQ9Y620 910 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 ME2P23368 584 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 PPIDQ08752 370 aaKnown RBP19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 NFYCQ13952 458 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 ZDHHC17Q8IUH5 632 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 OR6Y1Q8NGX8 325 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 OSCP1Q8WVF1 389 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 CHST7Q9NS84 486 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 RRN3P2A6NIE6 340 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 GLRBP48167 497 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 PTRHD1Q6GMV3 140 aaKnown RBP19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 MFSD7Q6UXD7 560 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 ERO1BQ86YB8 467 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 CCDC103Q8IW40 242 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 NUDT12Q9BQG2 462 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 BRD8Q9H0E9 1235 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 GIMAP4Q9NUV9 329 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 LSM7Q9UK45 103 aaKnown RBP19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 DNPEPQ9ULA0 475 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 TMX2Q9Y320 296 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 PXDNQ92626 1479 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 FBXO21O94952 628 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 MMRN1Q13201 1228 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 ORC1Q13415 861 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 TRAF7Q6Q0C0 670 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 GPRC5AQ8NFJ5 357 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 LATS2Q9NRM7 1088 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 CTNNAL1Q9UBT7 734 aa19.54■□□□□ 0.72
CCDC88B-204ENST00000463837 VWA5AO00534 786 aa19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 SMNDC1O75940 238 aaKnown RBP eCLIP19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 ATP6V1C1P21283 382 aa19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 TCF7P36402 384 aaPredicted RBP19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 GMPSP49915 693 aaPredicted RBP19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 LRRC74AQ0VAA2 488 aa19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 SREBF2Q12772 1141 aa19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 LACTB2Q53H82 288 aaPredicted RBP19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 OTOP1Q7RTM1 612 aa19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 WDCPQ9H6R7 721 aa19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 ETAA1Q9NY74 926 aa19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 APOC4-APOC2K7ER74 178 aa19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 APOC2P02655 101 aa19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 CYP3A4P08684 503 aa19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 RPA3P35244 121 aaPredicted RBP19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 KCNQ5Q9NR82 932 aa19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 CDV3Q9UKY7 258 aaKnown RBP19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 CYP2F1P24903 491 aa19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 SOX6P35712 828 aa19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 IL31Q6EBC2 164 aa19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 DCP1BQ8IZD4 617 aaKnown RBP19.53■□□□□ 0.72
CCDC88B-204ENST00000463837 THUMPD3Q9BV44 507 aaKnown RBP19.53■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms