RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 ZNF606Q8WXB4 792 aa15.92■□□□□ 0.14
LIMS3-201ENST00000437679 IRGQQ8WZA9 623 aa15.92■□□□□ 0.14
LIMS3-201ENST00000437679 SHC3Q92529 594 aa15.92■□□□□ 0.14
LIMS3-201ENST00000437679 GOLGA1Q92805 767 aa15.92■□□□□ 0.14
LIMS3-201ENST00000437679 PNKPQ96T60 521 aa15.92■□□□□ 0.14
LIMS3-201ENST00000437679 DCLK3Q9C098 648 aa15.92■□□□□ 0.14
LIMS3-201ENST00000437679 SIX2Q9NPC8 291 aa15.92■□□□□ 0.14
LIMS3-201ENST00000437679 ABCC13Q9NSE7 274 aa15.92■□□□□ 0.14
LIMS3-201ENST00000437679 TAB2Q9NYJ8 693 aa15.92■□□□□ 0.14
LIMS3-201ENST00000437679 ZNF510Q9Y2H8 683 aa15.92■□□□□ 0.14
LIMS3-201ENST00000437679 PTPRZ1P23471 2315 aaPredicted RBP15.92■□□□□ 0.14
LIMS3-201ENST00000437679 SLC12A8A0AV02 714 aa15.91■□□□□ 0.14
LIMS3-201ENST00000437679 PRR23AA6NEV1 266 aa15.91■□□□□ 0.14
LIMS3-201ENST00000437679 YJEFN3A6XGL0 299 aa15.91■□□□□ 0.14
LIMS3-201ENST00000437679 BECN2A8MW95 431 aa15.91■□□□□ 0.14
LIMS3-201ENST00000437679 E7ENQ6 273 aa15.91■□□□□ 0.14
LIMS3-201ENST00000437679 HOXC11O43248 304 aaPredicted RBP15.91■□□□□ 0.14
LIMS3-201ENST00000437679 GREM1O60565 184 aa15.91■□□□□ 0.14
LIMS3-201ENST00000437679 STC2O76061 302 aa15.91■□□□□ 0.14
LIMS3-201ENST00000437679 APODP05090 189 aa15.91■□□□□ 0.14
LIMS3-201ENST00000437679 HMBSP08397 361 aa15.91■□□□□ 0.14
LIMS3-201ENST00000437679 GPD2P43304 727 aa15.91■□□□□ 0.14
LIMS3-201ENST00000437679 ACADSBP45954 432 aa15.91■□□□□ 0.14
LIMS3-201ENST00000437679 SLC6A11P48066 632 aa15.91■□□□□ 0.14
LIMS3-201ENST00000437679 MYL5Q02045 173 aa15.91■□□□□ 0.14
LIMS3-201ENST00000437679 PTK2Q05397 1052 aa15.91■□□□□ 0.14
LIMS3-201ENST00000437679 PREPLQ4J6C6 727 aaPredicted RBP15.91■□□□□ 0.14
LIMS3-201ENST00000437679 CDKAL1Q5VV42 579 aa15.91■□□□□ 0.14
LIMS3-201ENST00000437679 DENND1BQ6P3S1 775 aa15.91■□□□□ 0.14
LIMS3-201ENST00000437679 C11orf57Q6ZUT1 292 aaPredicted RBP15.91■□□□□ 0.14
LIMS3-201ENST00000437679 TMEM25Q86YD3 366 aa15.91■□□□□ 0.14
LIMS3-201ENST00000437679 ANKRD20A12PQ8NF67 263 aa15.91■□□□□ 0.14
LIMS3-201ENST00000437679 EDEM1Q92611 657 aa15.91■□□□□ 0.14
LIMS3-201ENST00000437679 NELL1Q92832 810 aa15.91■□□□□ 0.14
LIMS3-201ENST00000437679 ST7Q9NRC1 585 aa15.91■□□□□ 0.14
LIMS3-201ENST00000437679 FAM186AA6NE01 2351 aa15.91■□□□□ 0.14
LIMS3-201ENST00000437679 MYO15AQ9UKN7 3530 aa15.9■□□□□ 0.14
LIMS3-201ENST00000437679 CHURC1-FNTBB4DL54 471 aa15.9■□□□□ 0.14
LIMS3-201ENST00000437679 SART1O43290 800 aaKnown RBP15.9■□□□□ 0.14
LIMS3-201ENST00000437679 TDGF1P13385 188 aa15.9■□□□□ 0.14
LIMS3-201ENST00000437679 KCNMA1Q12791 1236 aa15.9■□□□□ 0.14
LIMS3-201ENST00000437679 KRT31Q15323 416 aa15.9■□□□□ 0.14
LIMS3-201ENST00000437679 Q6ZNB5 142 aa15.9■□□□□ 0.14
LIMS3-201ENST00000437679 ASCL5Q7RTU5 278 aa15.9■□□□□ 0.14
LIMS3-201ENST00000437679 FMNL3Q8IVF7 1028 aa15.9■□□□□ 0.14
LIMS3-201ENST00000437679 ZBTB44Q8NCP5 570 aa15.9■□□□□ 0.14
LIMS3-201ENST00000437679 RPLP0P6Q8NHW5 317 aa15.9■□□□□ 0.14
LIMS3-201ENST00000437679 STK32AQ8WU08 396 aa15.9■□□□□ 0.14
LIMS3-201ENST00000437679 EZH1Q92800 747 aaPredicted RBP15.9■□□□□ 0.14
LIMS3-201ENST00000437679 LSM14BQ9BX40 385 aaKnown RBP15.9■□□□□ 0.14
LIMS3-201ENST00000437679 MIS12Q9H081 205 aa15.9■□□□□ 0.14
LIMS3-201ENST00000437679 VPS16Q9H269 839 aa15.9■□□□□ 0.14
LIMS3-201ENST00000437679 ACP6Q9NPH0 428 aa15.9■□□□□ 0.14
LIMS3-201ENST00000437679 ARHGEF4Q9NR80 690 aa15.9■□□□□ 0.14
LIMS3-201ENST00000437679 FANCLQ9NW38 375 aa15.9■□□□□ 0.14
LIMS3-201ENST00000437679 TMEM63CQ9P1W3 806 aa15.9■□□□□ 0.14
LIMS3-201ENST00000437679 WDR35Q9P2L0 1181 aa15.9■□□□□ 0.14
LIMS3-201ENST00000437679 SLC8A2Q9UPR5 921 aa15.9■□□□□ 0.14
LIMS3-201ENST00000437679 K7ESF4 209 aa15.89■□□□□ 0.13
LIMS3-201ENST00000437679 FOXN3O00409 490 aaPredicted RBP15.89■□□□□ 0.13
LIMS3-201ENST00000437679 GABBR2O75899 941 aa15.89■□□□□ 0.13
LIMS3-201ENST00000437679 KAT7O95251 611 aa15.89■□□□□ 0.13
LIMS3-201ENST00000437679 LMNAP02545 664 aaKnown RBP15.89■□□□□ 0.13
LIMS3-201ENST00000437679 CORO1AP31146 461 aaKnown RBP15.89■□□□□ 0.13
LIMS3-201ENST00000437679 GRIA2P42262 883 aa15.89■□□□□ 0.13
LIMS3-201ENST00000437679 BPIFB4P59827 614 aa15.89■□□□□ 0.13
LIMS3-201ENST00000437679 KDSRQ06136 332 aa15.89■□□□□ 0.13
LIMS3-201ENST00000437679 TYRO3Q06418 890 aa15.89■□□□□ 0.13
LIMS3-201ENST00000437679 RAPGEF1Q13905 1077 aa15.89■□□□□ 0.13
LIMS3-201ENST00000437679 FKBP15Q5T1M5 1219 aa15.89■□□□□ 0.13
LIMS3-201ENST00000437679 KLHDC7AQ5VTJ3 777 aa15.89■□□□□ 0.13
LIMS3-201ENST00000437679 PKN3Q6P5Z2 889 aa15.89■□□□□ 0.13
LIMS3-201ENST00000437679 TPGS1Q6ZTW0 290 aa15.89■□□□□ 0.13
LIMS3-201ENST00000437679 NUDT18Q6ZVK8 323 aa15.89■□□□□ 0.13
LIMS3-201ENST00000437679 C12orf40Q86WS4 652 aa15.89■□□□□ 0.13
LIMS3-201ENST00000437679 NAT16Q8N8M0 369 aa15.89■□□□□ 0.13
LIMS3-201ENST00000437679 ACDQ96AP0 544 aa15.89■□□□□ 0.13
LIMS3-201ENST00000437679 PLD4Q96BZ4 506 aa15.89■□□□□ 0.13
LIMS3-201ENST00000437679 XPO6Q96QU8 1125 aaKnown RBP15.89■□□□□ 0.13
LIMS3-201ENST00000437679 BBS2Q9BXC9 721 aa15.89■□□□□ 0.13
LIMS3-201ENST00000437679 NAT10Q9H0A0 1025 aaKnown RBP15.89■□□□□ 0.13
LIMS3-201ENST00000437679 C2orf42Q9NWW7 574 aa15.89■□□□□ 0.13
LIMS3-201ENST00000437679 MARK1Q9P0L2 795 aa15.89■□□□□ 0.13
LIMS3-201ENST00000437679 DEC1Q9P2X7 70 aa15.89■□□□□ 0.13
LIMS3-201ENST00000437679 AJAP1Q9UKB5 411 aaPredicted RBP15.89■□□□□ 0.13
LIMS3-201ENST00000437679 HBS1LQ9Y450 684 aaKnown RBP15.89■□□□□ 0.13
LIMS3-201ENST00000437679 VPS13AQ96RL7 3174 aa15.89■□□□□ 0.13
LIMS3-201ENST00000437679 NEDD8-MDP1E9PL57 170 aa15.88■□□□□ 0.13
LIMS3-201ENST00000437679 K7EQS6 105 aa15.88■□□□□ 0.13
LIMS3-201ENST00000437679 LILRB5O75023 590 aa15.88■□□□□ 0.13
LIMS3-201ENST00000437679 TULP3O75386 442 aa15.88■□□□□ 0.13
LIMS3-201ENST00000437679 LTFP02788 710 aa15.88■□□□□ 0.13
LIMS3-201ENST00000437679 KLKB1P03952 638 aa15.88■□□□□ 0.13
LIMS3-201ENST00000437679 CDK11BP21127 795 aaKnown RBP15.88■□□□□ 0.13
LIMS3-201ENST00000437679 KRT9P35527 623 aa15.88■□□□□ 0.13
LIMS3-201ENST00000437679 CHKAP35790 457 aa15.88■□□□□ 0.13
LIMS3-201ENST00000437679 RPL34P49207 117 aaKnown RBP15.88■□□□□ 0.13
LIMS3-201ENST00000437679 HARS2P49590 506 aaKnown RBP15.88■□□□□ 0.13
LIMS3-201ENST00000437679 SEC13P55735 322 aa15.88■□□□□ 0.13
LIMS3-201ENST00000437679 DRAP1Q14919 205 aaPredicted RBP15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 71.9 ms