RNA–Protein interactions for RNA: ENST00000433394.1

USP54-206, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 5

Gene USP54, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-206ENST00000433394 PNLIPRP1P54315 467 aa6.74□□□□□ -1.33
USP54-206ENST00000433394 GEMIN4P57678 1058 aaKnown RBP6.74□□□□□ -1.33
USP54-206ENST00000433394 TXNL4AP83876 142 aaKnown RBP6.74□□□□□ -1.33
USP54-206ENST00000433394 TBC1D25Q3MII6 688 aa6.74□□□□□ -1.33
USP54-206ENST00000433394 CTXN3Q4LDR2 81 aa6.74□□□□□ -1.33
USP54-206ENST00000433394 LY6G5CQ5SRR4 150 aa6.74□□□□□ -1.33
USP54-206ENST00000433394 TTC22Q5TAA0 569 aa6.74□□□□□ -1.33
USP54-206ENST00000433394 ABHD17BQ5VST6 288 aa6.74□□□□□ -1.33
USP54-206ENST00000433394 DGAT2L7PQ6IED9 249 aa6.74□□□□□ -1.33
USP54-206ENST00000433394 CCDC144NLQ6NUI1 221 aa6.74□□□□□ -1.33
USP54-206ENST00000433394 VWA1Q6PCB0 445 aa6.74□□□□□ -1.33
USP54-206ENST00000433394 ZSCAN2Q7Z7L9 614 aaPredicted RBP6.74□□□□□ -1.33
USP54-206ENST00000433394 LNX2Q8N448 690 aa6.74□□□□□ -1.33
USP54-206ENST00000433394 FSIP1Q8NA03 581 aa6.74□□□□□ -1.33
USP54-206ENST00000433394 OR1N1Q8NGS0 311 aa6.74□□□□□ -1.33
USP54-206ENST00000433394 CSGALNACT1Q8TDX6 532 aa6.74□□□□□ -1.33
USP54-206ENST00000433394 LPIN2Q92539 896 aa6.74□□□□□ -1.33
USP54-206ENST00000433394 C8orf49Q96NF6 230 aa6.74□□□□□ -1.33
USP54-206ENST00000433394 SENP7Q9BQF6 1050 aa6.74□□□□□ -1.33
USP54-206ENST00000433394 CINPQ9BW66 212 aaPredicted RBP6.74□□□□□ -1.33
USP54-206ENST00000433394 JMJD4Q9H9V9 463 aa6.74□□□□□ -1.33
USP54-206ENST00000433394 G6PC2Q9NQR9 355 aa6.74□□□□□ -1.33
USP54-206ENST00000433394 PI4KBQ9UBF8 816 aa6.74□□□□□ -1.33
USP54-206ENST00000433394 ZAR1LA6NP61 321 aa6.73□□□□□ -1.33
USP54-206ENST00000433394 KIF28PB7ZC32 967 aa6.73□□□□□ -1.33
USP54-206ENST00000433394 B9A039 149 aa6.73□□□□□ -1.33
USP54-206ENST00000433394 AGPSO00116 658 aa6.73□□□□□ -1.33
USP54-206ENST00000433394 PROM1O43490 865 aa6.73□□□□□ -1.33
USP54-206ENST00000433394 PDHA1P08559 390 aa6.73□□□□□ -1.33
USP54-206ENST00000433394 CKMT1AP12532 417 aa6.73□□□□□ -1.33
USP54-206ENST00000433394 HOXA5P20719 270 aa6.73□□□□□ -1.33
USP54-206ENST00000433394 PCP4P48539 62 aa6.73□□□□□ -1.33
USP54-206ENST00000433394 CLCN2P51788 898 aa6.73□□□□□ -1.33
USP54-206ENST00000433394 JAG1P78504 1218 aa6.73□□□□□ -1.33
USP54-206ENST00000433394 TP53BP2Q13625 1128 aa6.73□□□□□ -1.33
USP54-206ENST00000433394 ANKRD40Q6AI12 368 aa6.73□□□□□ -1.33
USP54-206ENST00000433394 RETSATQ6NUM9 610 aa6.73□□□□□ -1.33
USP54-206ENST00000433394 TMED8Q6PL24 325 aaPredicted RBP6.73□□□□□ -1.33
USP54-206ENST00000433394 MTHFD1LQ6UB35 978 aa6.73□□□□□ -1.33
USP54-206ENST00000433394 HERC6Q8IVU3 1022 aa6.73□□□□□ -1.33
USP54-206ENST00000433394 ARHGEF19Q8IW93 802 aa6.73□□□□□ -1.33
USP54-206ENST00000433394 LCORLQ8N3X6 602 aa6.73□□□□□ -1.33
USP54-206ENST00000433394 ADAM2Q99965 735 aa6.73□□□□□ -1.33
USP54-206ENST00000433394 TWSG1Q9GZX9 223 aa6.73□□□□□ -1.33
USP54-206ENST00000433394 NRDE2Q9H7Z3 1164 aa6.73□□□□□ -1.33
USP54-206ENST00000433394 FSCN3Q9NQT6 498 aa6.73□□□□□ -1.33
USP54-206ENST00000433394 IRAK4Q9NWZ3 460 aa6.73□□□□□ -1.33
USP54-206ENST00000433394 KCTD5Q9NXV2 234 aa6.73□□□□□ -1.33
USP54-206ENST00000433394 CES2O00748 559 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 MBD4O95243 580 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 VNN1O95497 513 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 CHRM2P08172 466 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 IFIT1P09914 478 aaKnown RBP6.72□□□□□ -1.33
USP54-206ENST00000433394 ZFXP17010 805 aaPredicted RBP6.72□□□□□ -1.33
USP54-206ENST00000433394 NDUFB7P17568 137 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 ADRA1DP25100 572 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 GKP32189 559 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 MAN1A1P33908 653 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 HTR7P34969 479 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 THBS4P35443 961 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 PBX1P40424 430 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 PTPRRQ15256 657 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 PTPAQ15257 358 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 DLGAP5Q15398 846 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 SMAD1Q15797 465 aaKnown RBP6.72□□□□□ -1.33
USP54-206ENST00000433394 TMEM63BQ5T3F8 832 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 SYT13Q7L8C5 426 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 MAVSQ7Z434 540 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 ANKRD44Q8N8A2 993 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 RP9Q8TA86 221 aaKnown RBP6.72□□□□□ -1.33
USP54-206ENST00000433394 IL17DQ8TAD2 202 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 CXorf38Q8TB03 319 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 NOC3LQ8WTT2 800 aaKnown RBP6.72□□□□□ -1.33
USP54-206ENST00000433394 SLC22A17Q8WUG5 538 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 ASB12Q8WXK4 309 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 EXTL1Q92935 676 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 RILPL2Q969X0 211 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 PBKQ96KB5 322 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 PAAF1Q9BRP4 392 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 AIFM2Q9BRQ8 373 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 UBN1Q9NPG3 1134 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 VPS45Q9NRW7 570 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 RXFP3Q9NSD7 469 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 CEP72Q9P209 647 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 MGAT4CQ9UBM8 478 aa6.72□□□□□ -1.33
USP54-206ENST00000433394 REXO2Q9Y3B8 237 aaKnown RBP6.72□□□□□ -1.33
USP54-206ENST00000433394 TBC1D3DA0A087WVF3 549 aa6.71□□□□□ -1.34
USP54-206ENST00000433394 TBC1D3IA0A087WXS9 549 aa6.71□□□□□ -1.34
USP54-206ENST00000433394 TBC1D3EA0A087X179 549 aa6.71□□□□□ -1.34
USP54-206ENST00000433394 TBC1D3KA0A087X1G2 549 aa6.71□□□□□ -1.34
USP54-206ENST00000433394 A0A0G2JLL6 359 aaPredicted RBP6.71□□□□□ -1.34
USP54-206ENST00000433394 CCDC151A5D8V7 595 aa6.71□□□□□ -1.34
USP54-206ENST00000433394 TBC1D3BA6NDS4 549 aa6.71□□□□□ -1.34
USP54-206ENST00000433394 FAM90A18PA6NE21 464 aa6.71□□□□□ -1.34
USP54-206ENST00000433394 TBC1D3FA6NER0 549 aaPredicted RBP6.71□□□□□ -1.34
USP54-206ENST00000433394 FAM90A16PA6NEW6 464 aa6.71□□□□□ -1.34
USP54-206ENST00000433394 SAC3D1A6NKF1 404 aa6.71□□□□□ -1.34
USP54-206ENST00000433394 FAM90A9PA6NNJ1 464 aa6.71□□□□□ -1.34
USP54-206ENST00000433394 FAM90A5PA8MXJ8 464 aa6.71□□□□□ -1.34
USP54-206ENST00000433394 TBC1D3LB9A6J9 549 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms