RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 PIH1D1Q9NWS0 290 aaKnown RBP15.84■□□□□ 0.13
PTPRF-206ENST00000429895 TIMM44O43615 452 aa15.83■□□□□ 0.13
PTPRF-206ENST00000429895 KLHL41O60662 606 aa15.83■□□□□ 0.13
PTPRF-206ENST00000429895 BAIAP3O94812 1187 aa15.83■□□□□ 0.13
PTPRF-206ENST00000429895 NUDT14O95848 222 aa15.83■□□□□ 0.13
PTPRF-206ENST00000429895 TGM3Q08188 693 aa15.83■□□□□ 0.13
PTPRF-206ENST00000429895 TRAF2Q12933 501 aa15.83■□□□□ 0.13
PTPRF-206ENST00000429895 POU6F1Q14863 301 aa15.83■□□□□ 0.13
PTPRF-206ENST00000429895 ILDR2Q71H61 639 aa15.83■□□□□ 0.13
PTPRF-206ENST00000429895 C16orf59Q7L2K0 433 aa15.83■□□□□ 0.13
PTPRF-206ENST00000429895 ACTR8Q9H981 624 aa15.83■□□□□ 0.13
PTPRF-206ENST00000429895 CTNNAL1Q9UBT7 734 aa15.83■□□□□ 0.13
PTPRF-206ENST00000429895 TAF6LQ9Y6J9 622 aa15.83■□□□□ 0.13
PTPRF-206ENST00000429895 CCT8L1PA6NM43 557 aa15.83■□□□□ 0.13
PTPRF-206ENST00000429895 SNTNA6NMZ2 147 aa15.83■□□□□ 0.13
PTPRF-206ENST00000429895 TCEA2Q15560 299 aa15.83■□□□□ 0.13
PTPRF-206ENST00000429895 COLGALT1Q8NBJ5 622 aa15.83■□□□□ 0.13
PTPRF-206ENST00000429895 TRPC4APQ8TEL6 797 aa15.83■□□□□ 0.13
PTPRF-206ENST00000429895 RXFP2Q8WXD0 754 aa15.83■□□□□ 0.13
PTPRF-206ENST00000429895 SH3BP4Q9P0V3 963 aa15.83■□□□□ 0.13
PTPRF-206ENST00000429895 SPATA31A6Q5VVP1 1343 aa15.83■□□□□ 0.12
PTPRF-206ENST00000429895 GCLCP48506 637 aaPredicted RBP15.83■□□□□ 0.12
PTPRF-206ENST00000429895 NECAB2Q7Z6G3 386 aa15.83■□□□□ 0.12
PTPRF-206ENST00000429895 TDRD5Q8NAT2 981 aaKnown RBP15.83■□□□□ 0.12
PTPRF-206ENST00000429895 CCDC126Q96EE4 140 aa15.83■□□□□ 0.12
PTPRF-206ENST00000429895 SERPINB12Q96P63 405 aa15.83■□□□□ 0.12
PTPRF-206ENST00000429895 INTS13Q9NVM9 706 aa15.83■□□□□ 0.12
PTPRF-206ENST00000429895 KLHL20Q9Y2M5 609 aa15.83■□□□□ 0.12
PTPRF-206ENST00000429895 GLI2P10070 1586 aa15.83■□□□□ 0.12
PTPRF-206ENST00000429895 ENO4A6NNW6 628 aa15.83■□□□□ 0.12
PTPRF-206ENST00000429895 FBXO21O94952 628 aa15.83■□□□□ 0.12
PTPRF-206ENST00000429895 CYLC2Q14093 348 aaPredicted RBP15.83■□□□□ 0.12
PTPRF-206ENST00000429895 CBWD3Q5JTY5 395 aa15.83■□□□□ 0.12
PTPRF-206ENST00000429895 CBWD5Q5RIA9 395 aa15.83■□□□□ 0.12
PTPRF-206ENST00000429895 FAM171A1Q5VUB5 890 aa15.83■□□□□ 0.12
PTPRF-206ENST00000429895 HDDC2Q7Z4H3 204 aa15.83■□□□□ 0.12
PTPRF-206ENST00000429895 LRRC6Q86X45 466 aa15.83■□□□□ 0.12
PTPRF-206ENST00000429895 PDHXO00330 501 aa15.83■□□□□ 0.12
PTPRF-206ENST00000429895 RAG1P15918 1043 aa15.83■□□□□ 0.12
PTPRF-206ENST00000429895 CYP2F1P24903 491 aa15.83■□□□□ 0.12
PTPRF-206ENST00000429895 BOP1Q14137 746 aaKnown RBP15.83■□□□□ 0.12
PTPRF-206ENST00000429895 GSTA3Q16772 222 aa15.83■□□□□ 0.12
PTPRF-206ENST00000429895 KRT77Q7Z794 578 aa15.83■□□□□ 0.12
PTPRF-206ENST00000429895 CISHQ9NSE2 258 aa15.83■□□□□ 0.12
PTPRF-206ENST00000429895 THG1LQ9NWX6 298 aaKnown RBP15.83■□□□□ 0.12
PTPRF-206ENST00000429895 ALKQ9UM73 1620 aa15.82■□□□□ 0.12
PTPRF-206ENST00000429895 TOMM20Q15388 145 aa15.82■□□□□ 0.12
PTPRF-206ENST00000429895 SEL1L3Q68CR1 1132 aa15.82■□□□□ 0.12
PTPRF-206ENST00000429895 SPOCD1Q6ZMY3 1216 aa15.82■□□□□ 0.12
PTPRF-206ENST00000429895 DPP10Q8N608 796 aa15.82■□□□□ 0.12
PTPRF-206ENST00000429895 SYN2Q92777 582 aaPredicted RBP15.82■□□□□ 0.12
PTPRF-206ENST00000429895 HAO1Q9UJM8 370 aa15.82■□□□□ 0.12
PTPRF-206ENST00000429895 SH3BGRLO75368 114 aa15.82■□□□□ 0.12
PTPRF-206ENST00000429895 CTDNEP1O95476 244 aa15.82■□□□□ 0.12
PTPRF-206ENST00000429895 CCND1P24385 295 aa15.82■□□□□ 0.12
PTPRF-206ENST00000429895 BST2Q10589 180 aaKnown RBP15.82■□□□□ 0.12
PTPRF-206ENST00000429895 BMPR2Q13873 1038 aa15.82■□□□□ 0.12
PTPRF-206ENST00000429895 BTG3Q14201 252 aaPredicted RBP15.82■□□□□ 0.12
PTPRF-206ENST00000429895 C16orf62Q7Z3J2 963 aa15.82■□□□□ 0.12
PTPRF-206ENST00000429895 SUGP1Q8IWZ8 645 aaKnown RBP15.82■□□□□ 0.12
PTPRF-206ENST00000429895 SYTL1Q8IYJ3 562 aa15.82■□□□□ 0.12
PTPRF-206ENST00000429895 FRMD8Q9BZ67 464 aaPredicted RBP15.82■□□□□ 0.12
PTPRF-206ENST00000429895 DRG1Q9Y295 367 aaKnown RBP15.82■□□□□ 0.12
PTPRF-206ENST00000429895 LRRC7Q96NW7 1537 aa15.82■□□□□ 0.12
PTPRF-206ENST00000429895 USP42Q9H9J4 1324 aaKnown RBP15.82■□□□□ 0.12
PTPRF-206ENST00000429895 GRIK4Q16099 956 aa15.82■□□□□ 0.12
PTPRF-206ENST00000429895 PHF21BQ96EK2 531 aa15.82■□□□□ 0.12
PTPRF-206ENST00000429895 RBM22Q9NW64 420 aaKnown RBP eCLIP15.82■□□□□ 0.122e-6■■■□□ 18.7
PTPRF-206ENST00000429895 TULP4Q9NRJ4 1543 aa15.82■□□□□ 0.12
PTPRF-206ENST00000429895 IGFBP4P22692 258 aa15.82■□□□□ 0.12
PTPRF-206ENST00000429895 FNDC3BQ53EP0 1204 aaKnown RBP15.82■□□□□ 0.12
PTPRF-206ENST00000429895 DNAAF5Q86Y56 855 aa15.82■□□□□ 0.12
PTPRF-206ENST00000429895 CNPY4Q8N129 248 aa15.82■□□□□ 0.12
PTPRF-206ENST00000429895 ZFYVE1Q9HBF4 777 aa15.82■□□□□ 0.12
PTPRF-206ENST00000429895 AGO4Q9HCK5 861 aaKnown RBP15.82■□□□□ 0.12
PTPRF-206ENST00000429895 THRAP10827 490 aa15.82■□□□□ 0.12
PTPRF-206ENST00000429895 GHRP10912 638 aa15.82■□□□□ 0.12
PTPRF-206ENST00000429895 CLK2P49760 499 aaKnown RBP15.82■□□□□ 0.12
PTPRF-206ENST00000429895 CSNK2BP67870 215 aa15.82■□□□□ 0.12
PTPRF-206ENST00000429895 C16orf72Q14CZ0 275 aa15.82■□□□□ 0.12
PTPRF-206ENST00000429895 OVOS1Q6IE37 1185 aa15.82■□□□□ 0.12
PTPRF-206ENST00000429895 TYW3Q6IPR3 259 aaKnown RBP15.82■□□□□ 0.12
PTPRF-206ENST00000429895 SLC20A1Q8WUM9 679 aa15.82■□□□□ 0.12
PTPRF-206ENST00000429895 KIAA1257Q9ULG3 409 aa15.82■□□□□ 0.12
PTPRF-206ENST00000429895 CAPN1P07384 714 aa15.81■□□□□ 0.12
PTPRF-206ENST00000429895 ENO2P09104 434 aaPredicted RBP15.81■□□□□ 0.12
PTPRF-206ENST00000429895 GARTP22102 1010 aa15.81■□□□□ 0.12
PTPRF-206ENST00000429895 FLT3P36888 993 aa15.81■□□□□ 0.12
PTPRF-206ENST00000429895 NR6A1Q15406 480 aa15.81■□□□□ 0.12
PTPRF-206ENST00000429895 C3orf67Q6ZVT6 689 aa15.81■□□□□ 0.12
PTPRF-206ENST00000429895 GFM2Q969S9 779 aaKnown RBP15.81■□□□□ 0.12
PTPRF-206ENST00000429895 A0A087X0T9 212 aa15.81■□□□□ 0.12
PTPRF-206ENST00000429895 FAM228BP0C875 321 aa15.81■□□□□ 0.12
PTPRF-206ENST00000429895 SOX6P35712 828 aa15.81■□□□□ 0.12
PTPRF-206ENST00000429895 DSG1Q02413 1049 aa15.81■□□□□ 0.12
PTPRF-206ENST00000429895 CYP24A1Q07973 514 aa15.81■□□□□ 0.12
PTPRF-206ENST00000429895 TRIM32Q13049 653 aa15.81■□□□□ 0.12
PTPRF-206ENST00000429895 MAPK7Q13164 816 aa15.81■□□□□ 0.12
PTPRF-206ENST00000429895 GIT2Q14161 759 aa15.81■□□□□ 0.12
PTPRF-206ENST00000429895 RCN1Q15293 331 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms