RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 ZCCHC8Q6NZY4 707 aaKnown RBP13.25□□□□□ -0.29
COL6A3-206ENST00000409809 LRRC47Q8N1G4 583 aaKnown RBP13.25□□□□□ -0.29
COL6A3-206ENST00000409809 F8W810 466 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 CDC40O60508 579 aaKnown RBP eCLIP13.25□□□□□ -0.29
COL6A3-206ENST00000409809 TGM2P21980 687 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 MAGEA2P43356 314 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 MAGEB10Q96LZ2 347 aaPredicted RBP13.25□□□□□ -0.29
COL6A3-206ENST00000409809 ERMAPQ96PL5 475 aaPredicted RBP13.25□□□□□ -0.29
COL6A3-206ENST00000409809 CHP1Q99653 195 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 CATSPERBQ9H7T0 1116 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 CEP152O94986 1710 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 ZC3H11AO75152 810 aaKnown RBP eCLIP13.25□□□□□ -0.29
COL6A3-206ENST00000409809 UQCRBP14927 111 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 SCN1BQ07699 218 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 ERMARDQ5T6L9 678 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 THEMIS2Q5TEJ8 643 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 PJA1Q8NG27 643 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 AAR2Q9Y312 384 aaKnown RBP13.25□□□□□ -0.29
COL6A3-206ENST00000409809 ALAS1P13196 640 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 EPHB2P29323 1055 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 ATP12AP54707 1039 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 NUDT12Q9BQG2 462 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 ZSWIM5Q9P217 1185 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 PLCL2Q9UPR0 1127 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 PKP3Q9Y446 797 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 CLCN2P51788 898 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 PTGES3Q15185 160 aaKnown RBP13.25□□□□□ -0.29
COL6A3-206ENST00000409809 MRNIPQ6NTE8 343 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 SHC4Q6S5L8 630 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 ZFAND2BQ8WV99 257 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 CROTQ9UKG9 612 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 DUSP12Q9UNI6 340 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 MYH13Q9UKX3 1938 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 AFF2P51816 1311 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 H3BQF6 201 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 TRDMT1O14717 391 aaKnown RBP13.25□□□□□ -0.29
COL6A3-206ENST00000409809 ECE2O60344 883 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 BMP3P12645 472 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 CPA3P15088 417 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 KCTD21Q4G0X4 260 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 KLHL24Q6TFL4 600 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 ATG14Q6ZNE5 492 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 RBM44Q6ZP01 1051 aaKnown RBP13.25□□□□□ -0.29
COL6A3-206ENST00000409809 HAUS6Q7Z4H7 955 aa13.25□□□□□ -0.29
COL6A3-206ENST00000409809 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.25□□□□□ -0.29
COL6A3-206ENST00000409809 XDHP47989 1333 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 LLGL1Q15334 1064 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 ARL10Q8N8L6 244 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 VCPIP1Q96JH7 1222 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 PAFAH2Q99487 392 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 CDC42EP4Q9H3Q1 356 aaKnown RBP13.24□□□□□ -0.29
COL6A3-206ENST00000409809 PNPLA8Q9NP80 782 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 KIAA1210Q9ULL0 1709 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 GNPATO15228 680 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 EIF5AP63241 154 aaKnown RBP13.24□□□□□ -0.29
COL6A3-206ENST00000409809 MIER2Q8N344 545 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 AGAP11Q8TF27 550 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 ZNF518BQ9C0D4 1074 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 SPAG4Q9NPE6 437 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 TFCP2L1Q9NZI6 479 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 USP42Q9H9J4 1324 aaKnown RBP13.24□□□□□ -0.29
COL6A3-206ENST00000409809 FCHO1O14526 889 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 TBX3O15119 743 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 NR3C2P08235 984 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 ABHD2P08910 425 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 SMCO1Q147U7 214 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 TFB1MQ8WVM0 346 aaKnown RBP13.24□□□□□ -0.29
COL6A3-206ENST00000409809 ASIC4Q96FT7 647 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 ALG6Q9Y672 507 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 REM1O75628 298 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 GSSP48637 474 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 ZSWIM7Q19AV6 140 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 RAD9BQ6WBX8 426 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 KCNB2Q92953 911 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 ZC3H10Q96K80 434 aaKnown RBP13.24□□□□□ -0.29
COL6A3-206ENST00000409809 PCDH9Q9HC56 1237 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 SYNPO2Q9UMS6 1093 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 ERGIC3Q9Y282 383 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.24□□□□□ -0.29
COL6A3-206ENST00000409809 BCLAF3A2AJT9 711 aaKnown RBP13.24□□□□□ -0.29
COL6A3-206ENST00000409809 KRT36O76013 467 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 CPA2P48052 419 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 CDH4P55283 916 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 RC3H1Q5TC82 1133 aaKnown RBP13.24□□□□□ -0.29
COL6A3-206ENST00000409809 SH3KBP1Q96B97 665 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 UGGT1Q9NYU2 1555 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 LMTK3Q96Q04 1460 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 OR14I1A6ND48 311 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 GRK3P35626 688 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 NFYCQ13952 458 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 PID1Q7Z2X4 250 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 SPEF1Q9Y4P9 236 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 PLA2R1Q13018 1463 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 APOC1P02654 83 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 ATF4P18848 351 aaPredicted RBP13.24□□□□□ -0.29
COL6A3-206ENST00000409809 S100GP29377 79 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 PIK3CGP48736 1102 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 IST1P53990 364 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 NFIAQ12857 509 aa13.24□□□□□ -0.29
COL6A3-206ENST00000409809 EPHX4Q8IUS5 362 aa13.24□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms