RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 SNX3O60493 162 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 HMBSP08397 361 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 RBP5P82980 135 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 TWF1Q12792 350 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 GPR107Q5VW38 600 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 ZSWIM2Q8NEG5 633 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 LIMD1Q9UGP4 676 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 CYP4Z1Q86W10 505 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 EZH1Q92800 747 aaPredicted RBP12.18□□□□□ -0.46
SYNPO-202ENST00000394243 GALNT8Q9NY28 637 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.18□□□□□ -0.46
SYNPO-202ENST00000394243 ZNF222Q9UK12 451 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 MTSS1O43312 755 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 SERPINE1P05121 402 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 ITGA1P56199 1179 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 RBM43Q6ZSC3 357 aaKnown RBP12.18□□□□□ -0.46
SYNPO-202ENST00000394243 CCNJLQ8IV13 435 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 SYNE4Q8N205 404 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 MTG1Q9BT17 334 aaPredicted RBP12.18□□□□□ -0.46
SYNPO-202ENST00000394243 UNKQ9C0B0 810 aaKnown RBP12.18□□□□□ -0.46
SYNPO-202ENST00000394243 SMARCAD1Q9H4L7 1026 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 KRCC1Q9NPI7 259 aaPredicted RBP12.18□□□□□ -0.46
SYNPO-202ENST00000394243 CCDC167Q9P0B6 97 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 SNX8Q9Y5X2 465 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 FOSL2P15408 326 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 GSTA3Q16772 222 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 KRT74Q7RTS7 529 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 ZDHHC13Q8IUH4 622 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 RBM46Q8TBY0 533 aaKnown RBP12.18□□□□□ -0.46
SYNPO-202ENST00000394243 MTMR8Q96EF0 704 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 APOPT1Q96IL0 206 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 LRMDAQ9H2I8 198 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 PTPRHQ9HD43 1115 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 NDUFAF1Q9Y375 327 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 LAMC1P11047 1609 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 ALOX15P16050 662 aaPredicted RBP12.18□□□□□ -0.46
SYNPO-202ENST00000394243 CRKP46108 304 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 GOLGA7BQ2TAP0 167 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 ZCCHC23Q6ZST2 131 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 ZNF571Q7Z3V5 609 aaPredicted RBP12.18□□□□□ -0.46
SYNPO-202ENST00000394243 NECAB2Q7Z6G3 386 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 AKAP14Q86UN6 197 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 MAGEE2Q8TD90 523 aaPredicted RBP12.18□□□□□ -0.46
SYNPO-202ENST00000394243 KLHL32Q96NJ5 620 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 TSEN34Q9BSV6 310 aaKnown RBP12.18□□□□□ -0.46
SYNPO-202ENST00000394243 GPR63Q9BZJ6 419 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 CATSPERBQ9H7T0 1116 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 TELO2Q9Y4R8 837 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 CCNG2Q16589 344 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 KYAT1Q16773 422 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 KAT2BQ92831 832 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 RNF146Q9NTX7 359 aa12.18□□□□□ -0.46
SYNPO-202ENST00000394243 A0A0A6YYK5 440 aaPredicted RBP12.17□□□□□ -0.46
SYNPO-202ENST00000394243 VIL1P09327 827 aaKnown RBP12.17□□□□□ -0.46
SYNPO-202ENST00000394243 CSHL1Q14406 222 aa12.17□□□□□ -0.46
SYNPO-202ENST00000394243 TMEM132DQ14C87 1099 aa12.17□□□□□ -0.46
SYNPO-202ENST00000394243 UGT3A1Q6NUS8 523 aa12.17□□□□□ -0.46
SYNPO-202ENST00000394243 C8orf59Q8N0T1 100 aaPredicted RBP12.17□□□□□ -0.46
SYNPO-202ENST00000394243 C10orf53Q8N6V4 93 aa12.17□□□□□ -0.46
SYNPO-202ENST00000394243 LRRC40Q9H9A6 602 aa12.17□□□□□ -0.46
SYNPO-202ENST00000394243 ZFYVE1Q9HBF4 777 aa12.17□□□□□ -0.46
SYNPO-202ENST00000394243 EPB42P16452 691 aa12.17□□□□□ -0.46
SYNPO-202ENST00000394243 IL12AP29459 219 aa12.17□□□□□ -0.46
SYNPO-202ENST00000394243 RPA3P35244 121 aaPredicted RBP12.17□□□□□ -0.46
SYNPO-202ENST00000394243 HLFQ16534 295 aa12.17□□□□□ -0.46
SYNPO-202ENST00000394243 ZNF467Q7Z7K2 595 aaPredicted RBP12.17□□□□□ -0.46
SYNPO-202ENST00000394243 NT5C1AQ9BXI3 368 aa12.17□□□□□ -0.46
SYNPO-202ENST00000394243 DSEQ9UL01 958 aa12.17□□□□□ -0.46
SYNPO-202ENST00000394243 MRASO14807 208 aa12.17□□□□□ -0.46
SYNPO-202ENST00000394243 NPM3O75607 178 aaKnown RBP12.17□□□□□ -0.46
SYNPO-202ENST00000394243 STX4Q12846 297 aa12.17□□□□□ -0.46
SYNPO-202ENST00000394243 SUPT20HL1Q3ZLR7 823 aa12.17□□□□□ -0.46
SYNPO-202ENST00000394243 GLRA4Q5JXX5 417 aa12.17□□□□□ -0.46
SYNPO-202ENST00000394243 TTC7BQ86TV6 843 aa12.17□□□□□ -0.46
SYNPO-202ENST00000394243 GPRASP2Q96D09 838 aa12.17□□□□□ -0.46
SYNPO-202ENST00000394243 TPD52L3Q96J77 140 aa12.17□□□□□ -0.46
SYNPO-202ENST00000394243 UBE2OQ9C0C9 1292 aaKnown RBP12.17□□□□□ -0.46
SYNPO-202ENST00000394243 PRDM5Q9NQX1 630 aaPredicted RBP12.17□□□□□ -0.46
SYNPO-202ENST00000394243 STARD13Q9Y3M8 1113 aa12.17□□□□□ -0.46
SYNPO-202ENST00000394243 ANXA9O76027 345 aa12.17□□□□□ -0.46
SYNPO-202ENST00000394243 DDR1Q08345 913 aa12.17□□□□□ -0.46
SYNPO-202ENST00000394243 CENPIQ92674 756 aaPredicted RBP12.17□□□□□ -0.46
SYNPO-202ENST00000394243 SENP2Q9HC62 589 aa12.17□□□□□ -0.46
SYNPO-202ENST00000394243 NINJ2Q9NZG7 142 aa12.17□□□□□ -0.46
SYNPO-202ENST00000394243 GGA2Q9UJY4 613 aa12.17□□□□□ -0.46
SYNPO-202ENST00000394243 ACOT9Q9Y305 439 aa12.17□□□□□ -0.46
SYNPO-202ENST00000394243 LIN7AO14910 233 aaPredicted RBP12.17□□□□□ -0.46
SYNPO-202ENST00000394243 SNX17Q15036 470 aa12.17□□□□□ -0.46
SYNPO-202ENST00000394243 FIGNQ5HY92 759 aa12.17□□□□□ -0.46
SYNPO-202ENST00000394243 TRNAU1APQ9NX07 287 aaKnown RBP12.17□□□□□ -0.46
SYNPO-202ENST00000394243 TTC37Q6PGP7 1564 aa12.17□□□□□ -0.46
SYNPO-202ENST00000394243 ZNF335Q9H4Z2 1342 aaPredicted RBP12.16□□□□□ -0.46
SYNPO-202ENST00000394243 RARBP10826 455 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 CCNA2P20248 432 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 WARSP23381 471 aaKnown RBP12.16□□□□□ -0.46
SYNPO-202ENST00000394243 SSTR1P30872 391 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 PRKAA1Q13131 559 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 SPATA2LQ8IUW3 424 aaPredicted RBP12.16□□□□□ -0.46
SYNPO-202ENST00000394243 B3GALNT2Q8NCR0 500 aa12.16□□□□□ -0.46
SYNPO-202ENST00000394243 BPIFB6Q8NFQ5 453 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 67.2 ms