RNA–Protein interactions for RNA: ENST00000271628.8

SF3B4-201, Transcript of splicing factor 3b subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B4, Length 2,085 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-201ENST00000271628 SLC9A4Q6AI14 798 aa15.93■□□□□ 0.14
SF3B4-201ENST00000271628 C6orf89Q6UWU4 347 aa15.93■□□□□ 0.14
SF3B4-201ENST00000271628 PGM2Q96G03 612 aa15.93■□□□□ 0.14
SF3B4-201ENST00000271628 SMOQ99835 787 aa15.93■□□□□ 0.14
SF3B4-201ENST00000271628 XRN2Q9H0D6 950 aaKnown RBP eCLIP15.93■□□□□ 0.14
SF3B4-201ENST00000271628 PRDM16Q9HAZ2 1276 aa15.93■□□□□ 0.14
SF3B4-201ENST00000271628 AP4E1Q9UPM8 1137 aa15.93■□□□□ 0.14
SF3B4-201ENST00000271628 ETS1P14921 441 aa15.92■□□□□ 0.14
SF3B4-201ENST00000271628 SELPP16109 830 aa15.92■□□□□ 0.14
SF3B4-201ENST00000271628 PECAM1P16284 738 aaPredicted RBP15.92■□□□□ 0.14
SF3B4-201ENST00000271628 TFE3P19532 575 aaPredicted RBP15.92■□□□□ 0.14
SF3B4-201ENST00000271628 L1CAMP32004 1257 aa15.92■□□□□ 0.14
SF3B4-201ENST00000271628 SULT1E1P49888 294 aa15.92■□□□□ 0.14
SF3B4-201ENST00000271628 CDK7P50613 346 aa15.92■□□□□ 0.14
SF3B4-201ENST00000271628 ROR1Q01973 937 aa15.92■□□□□ 0.14
SF3B4-201ENST00000271628 PAN2Q504Q3 1202 aaKnown RBP15.92■□□□□ 0.14
SF3B4-201ENST00000271628 OVOS1Q6IE37 1185 aa15.92■□□□□ 0.14
SF3B4-201ENST00000271628 CD300LGQ6UXG3 332 aa15.92■□□□□ 0.14
SF3B4-201ENST00000271628 LRRC8DQ7L1W4 858 aa15.92■□□□□ 0.14
SF3B4-201ENST00000271628 PRUNE1Q86TP1 453 aa15.92■□□□□ 0.14
SF3B4-201ENST00000271628 PLD5Q8N7P1 536 aa15.92■□□□□ 0.14
SF3B4-201ENST00000271628 SLC2A13Q96QE2 648 aa15.92■□□□□ 0.14
SF3B4-201ENST00000271628 NPY6RQ99463 290 aa15.92■□□□□ 0.14
SF3B4-201ENST00000271628 SHOC2Q9UQ13 582 aa15.92■□□□□ 0.14
SF3B4-201ENST00000271628 DNM1LO00429 736 aa15.91■□□□□ 0.14
SF3B4-201ENST00000271628 CAPN9O14815 690 aa15.91■□□□□ 0.14
SF3B4-201ENST00000271628 SHBGP04278 402 aa15.91■□□□□ 0.14
SF3B4-201ENST00000271628 NDUFV1P49821 464 aa15.91■□□□□ 0.14
SF3B4-201ENST00000271628 DAOAP59103 153 aa15.91■□□□□ 0.14
SF3B4-201ENST00000271628 PPP6R3Q5H9R7 873 aaPredicted RBP15.91■□□□□ 0.14
SF3B4-201ENST00000271628 NOMO2Q5JPE7 1267 aa15.91■□□□□ 0.14
SF3B4-201ENST00000271628 DARS2Q6PI48 645 aaKnown RBP15.91■□□□□ 0.14
SF3B4-201ENST00000271628 SUGP1Q8IWZ8 645 aaKnown RBP15.91■□□□□ 0.14
SF3B4-201ENST00000271628 PCDH19Q8TAB3 1148 aa15.91■□□□□ 0.14
SF3B4-201ENST00000271628 KCNK16Q96T55 309 aa15.91■□□□□ 0.14
SF3B4-201ENST00000271628 RTP3Q9BQQ7 232 aa15.91■□□□□ 0.14
SF3B4-201ENST00000271628 DHX35Q9H5Z1 703 aaKnown RBP15.91■□□□□ 0.14
SF3B4-201ENST00000271628 GPATCH2LQ9NWQ4 482 aa15.91■□□□□ 0.14
SF3B4-201ENST00000271628 RRN3Q9NYV6 651 aa15.91■□□□□ 0.14
SF3B4-201ENST00000271628 RCOR3Q9P2K3 495 aaPredicted RBP15.91■□□□□ 0.14
SF3B4-201ENST00000271628 TRIM17Q9Y577 477 aa15.91■□□□□ 0.14
SF3B4-201ENST00000271628 CFAP69A5D8W1 941 aa15.91■□□□□ 0.14
SF3B4-201ENST00000271628 C5orf60A6NFR6 353 aa15.91■□□□□ 0.14
SF3B4-201ENST00000271628 I3L4J1 428 aa15.91■□□□□ 0.14
SF3B4-201ENST00000271628 NR2C2P49116 596 aa15.91■□□□□ 0.14
SF3B4-201ENST00000271628 AIF1P55008 147 aa15.91■□□□□ 0.14
SF3B4-201ENST00000271628 TSPY1Q01534 308 aa15.91■□□□□ 0.14
SF3B4-201ENST00000271628 CA9Q16790 459 aa15.91■□□□□ 0.14
SF3B4-201ENST00000271628 RNASEH2BQ5TBB1 312 aaKnown RBP15.91■□□□□ 0.14
SF3B4-201ENST00000271628 BNIPLQ7Z465 357 aa15.91■□□□□ 0.14
SF3B4-201ENST00000271628 PPIL6Q8IXY8 311 aa15.91■□□□□ 0.14
SF3B4-201ENST00000271628 ZMIZ2Q8NF64 920 aa15.91■□□□□ 0.14
SF3B4-201ENST00000271628 HASPINQ8TF76 798 aa15.91■□□□□ 0.14
SF3B4-201ENST00000271628 MYLPFQ96A32 169 aa15.91■□□□□ 0.14
SF3B4-201ENST00000271628 RBM15Q96T37 977 aaKnown RBP eCLIP15.91■□□□□ 0.14
SF3B4-201ENST00000271628 SLC9A7Q96T83 725 aa15.91■□□□□ 0.14
SF3B4-201ENST00000271628 ADAM33Q9BZ11 813 aa15.91■□□□□ 0.14
SF3B4-201ENST00000271628 ULBP1Q9BZM6 244 aa15.91■□□□□ 0.14
SF3B4-201ENST00000271628 STMN4Q9H169 189 aaPredicted RBP15.91■□□□□ 0.14
SF3B4-201ENST00000271628 ELAC1Q9H777 363 aaKnown RBP15.91■□□□□ 0.14
SF3B4-201ENST00000271628 PNPLA8Q9NP80 782 aa15.91■□□□□ 0.14
SF3B4-201ENST00000271628 TMEM189-UBE2V1I3L0A0 370 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 ZBED1O96006 694 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 ATXN1P54253 815 aaKnown RBP15.9■□□□□ 0.14
SF3B4-201ENST00000271628 GDF10P55107 478 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 DSC1Q08554 894 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 ZC3H18Q86VM9 953 aaKnown RBP15.9■□□□□ 0.14
SF3B4-201ENST00000271628 UNC45BQ8IWX7 931 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 CNPY4Q8N129 248 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 PQLC3Q8N755 202 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 IRGQQ8WZA9 623 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 TTC25Q96NG3 672 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 FAM193BQ96PV7 902 aaPredicted RBP15.9■□□□□ 0.14
SF3B4-201ENST00000271628 PHACTR1Q9C0D0 580 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 NRDE2Q9H7Z3 1164 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 TMEM161AQ9NX61 479 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 FZD10Q9ULW2 581 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 PCDHB8Q9UN66 801 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 CAPN7Q9Y6W3 813 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 TSC2P49815 1807 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 H7C0C1 242 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 M0QYT0 321 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 RASGRF2O14827 1237 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 ACSL3O95573 720 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 CYP2F1P24903 491 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 RPL22P35268 128 aaKnown RBP15.9■□□□□ 0.14
SF3B4-201ENST00000271628 ARL4AP40617 200 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 ATP5OP48047 213 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 CTCFP49711 727 aaPredicted RBP15.9■□□□□ 0.14
SF3B4-201ENST00000271628 YWHAHQ04917 246 aaPredicted RBP15.9■□□□□ 0.14
SF3B4-201ENST00000271628 DEUP1Q05D60 604 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 IFT88Q13099 833 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 KYNUQ16719 465 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 ICE2Q659A1 982 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 C1orf228Q6PIY5 440 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 NPNTQ6UXI9 565 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 BZW1Q7L1Q6 419 aaKnown RBP15.9■□□□□ 0.14
SF3B4-201ENST00000271628 SCML4Q8N228 414 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 FAM71DQ8N9W8 422 aa15.9■□□□□ 0.14
SF3B4-201ENST00000271628 LINC01599Q8WXQ3 324 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms