RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 THAP1Q9NVV9 213 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 VANGL2Q9ULK5 521 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 RNF112Q9ULX5 631 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 SYNPO2Q9UMS6 1093 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 EIF3LQ9Y262 564 aaKnown RBP11.07□□□□□ -0.64
CD44-201ENST00000263398 SH3BP1Q9Y3L3 701 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 C3P01024 1663 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP11.07□□□□□ -0.64
CD44-201ENST00000263398 USP1O94782 785 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 FSBPO95073 299 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 ZNF177Q13360 481 aaPredicted RBP11.07□□□□□ -0.64
CD44-201ENST00000263398 OLFML2BQ68BL8 750 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 IZUMO2Q6UXV1 221 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 CENPTQ96BT3 561 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 SRPK1Q96SB4 655 aaKnown RBP11.07□□□□□ -0.64
CD44-201ENST00000263398 ZFYVE28Q9HCC9 887 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 GPAMQ9HCL2 828 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 CYP4F12Q9HCS2 524 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 SEPT3Q9UH03 358 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 CDV3Q9UKY7 258 aaKnown RBP11.07□□□□□ -0.64
CD44-201ENST00000263398 COL5A2P05997 1499 aaPredicted RBP11.07□□□□□ -0.64
CD44-201ENST00000263398 H3BRB1 525 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 APOC4-APOC2K7ER74 178 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 ACKR2O00590 384 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 TRIM13O60858 407 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 APOC2P02655 101 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 VEGFAP15692 232 aaPredicted RBP11.07□□□□□ -0.64
CD44-201ENST00000263398 NDST1P52848 882 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 DRG2P55039 364 aaKnown RBP11.07□□□□□ -0.64
CD44-201ENST00000263398 CXCL9Q07325 125 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 PPP3CAQ08209 521 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 PRKAA1Q13131 559 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 ITGA9Q13797 1035 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 APOBEC3HQ6NTF7 200 aaKnown RBP11.07□□□□□ -0.64
CD44-201ENST00000263398 MIB1Q86YT6 1006 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 GLIS3Q8NEA6 775 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 BAP1Q92560 729 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 HAS1Q92839 578 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 BTBD10Q9BSF8 475 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 KLHL4Q9C0H6 718 aa11.07□□□□□ -0.64
CD44-201ENST00000263398 TUT1Q9H6E5 874 aaKnown RBP11.07□□□□□ -0.64
CD44-201ENST00000263398 EXOSC4Q9NPD3 245 aaKnown RBP11.07□□□□□ -0.64
CD44-201ENST00000263398 GPR182O15218 404 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 TAL1P17542 331 aaPredicted RBP11.06□□□□□ -0.64
CD44-201ENST00000263398 DSG3P32926 999 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 N4BP2L1Q5TBK1 243 aaPredicted RBP11.06□□□□□ -0.64
CD44-201ENST00000263398 CACHD1Q5VU97 1274 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 FOXR2Q6PJQ5 311 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 DEFB107AQ8IZN7 70 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 FAM9CQ8IZT9 166 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 KYQ8NBH2 561 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 ZNF75CPQ92670 426 aaPredicted RBP11.06□□□□□ -0.64
CD44-201ENST00000263398 SAR1AQ9NR31 198 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 RRN3Q9NYV6 651 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 DCCP43146 1447 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 A0A0U1RQJ8 604 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 BTNL10A8MVZ5 291 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 GOLGA8TH3BQL2 631 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 EPHB6O15197 1021 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 WDR47O94967 919 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 THP07101 528 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 ZNF23P17027 643 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 ALDH1A3P47895 512 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 GCLCP48506 637 aaPredicted RBP11.06□□□□□ -0.64
CD44-201ENST00000263398 NR2C2P49116 596 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 CASP5P51878 434 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 PPATQ06203 517 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 RRP1BQ14684 758 aaKnown RBP11.06□□□□□ -0.64
CD44-201ENST00000263398 TTMPQ5BVD1 217 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 NBPF12Q5TAG4 269 aaPredicted RBP11.06□□□□□ -0.64
CD44-201ENST00000263398 SNX30Q5VWJ9 437 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 ADCK2Q7Z695 626 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 YTHDF3Q7Z739 585 aaKnown RBP11.06□□□□□ -0.64
CD44-201ENST00000263398 FUKQ8N0W3 1084 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 TDRD5Q8NAT2 981 aaKnown RBP11.06□□□□□ -0.64
CD44-201ENST00000263398 RIN3Q8TB24 985 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 MKL1Q969V6 931 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 LRRC39Q96DD0 335 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 L3MBTL3Q96JM7 780 aaPredicted RBP11.06□□□□□ -0.64
CD44-201ENST00000263398 LRCH1Q9Y2L9 728 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 F5H5T6 163 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 CLPTM1O96005 669 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 IRF1P10914 325 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 INSRRP14616 1297 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 TKTL1P51854 596 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 OAZ1P54368 228 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 DEFA1P59665 94 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 DEFA3P59666 94 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 TBL3Q12788 808 aaKnown RBP11.06□□□□□ -0.64
CD44-201ENST00000263398 CDH17Q12864 832 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 CCDC153Q494R4 210 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 TJAP1Q5JTD0 557 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 FOXR1Q6PIV2 292 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 BBS7Q8IWZ6 715 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 KIAA2013Q8IYS2 634 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 SPATA20Q8TB22 786 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 HTR3CQ8WXA8 447 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 CPB2Q96IY4 423 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 GLT1D1Q96MS3 346 aa11.06□□□□□ -0.64
CD44-201ENST00000263398 GANQ9H2C0 597 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms