RNA–Protein interactions for RNA: ENST00000219084.10

CHD9-201, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 1 (best)

Gene CHD9, Length 8,739 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-201ENST00000219084 MORF4L1Q9UBU8 362 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 TRIM10Q9UDY6 481 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 VANGL2Q9ULK5 521 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 UBQLN1Q9UMX0 589 aaKnown RBP4.54□□□□□ -1.68
CHD9-201ENST00000219084 SPATA31A6Q5VVP1 1343 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 UBA6A0AVT1 1052 aaPredicted RBP4.54□□□□□ -1.68
CHD9-201ENST00000219084 ASNA1O43681 348 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 VIL1P09327 827 aaKnown RBP4.54□□□□□ -1.68
CHD9-201ENST00000219084 ALOX5P09917 674 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 HLA-DPA1P20036 260 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 MSH3P20585 1137 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 EIF4BP23588 611 aaKnown RBP4.54□□□□□ -1.68
CHD9-201ENST00000219084 IFNGR2P38484 337 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 SLC1A6P48664 564 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 TAF6P49848 677 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 TGM3Q08188 693 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 BNIP2Q12982 314 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 ZBTB41Q5SVQ8 909 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 FAM45BPQ6NSW5 357 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 WRNIP1Q96S55 665 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 IRX2Q9BZI1 471 aaPredicted RBP4.54□□□□□ -1.68
CHD9-201ENST00000219084 CASS4Q9NQ75 786 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 ETAA1Q9NY74 926 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 PRKAG2Q9UGJ0 569 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 RNF112Q9ULX5 631 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 RPS6KL1Q9Y6S9 549 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 IFRD1O00458 451 aaPredicted RBP4.54□□□□□ -1.68
CHD9-201ENST00000219084 OPLAHO14841 1288 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 MSH4O15457 936 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 MYL3P08590 195 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 VCLP18206 1134 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 RPL3P39023 403 aaKnown RBP4.54□□□□□ -1.68
CHD9-201ENST00000219084 GNA13Q14344 377 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 SEC23AQ15436 765 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 ATP6AP1LQ52LC2 224 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 SPDYAQ5MJ70 313 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 METTL3Q86U44 580 aaKnown RBP4.54□□□□□ -1.68
CHD9-201ENST00000219084 MTDHQ86UE4 582 aaKnown RBP4.54□□□□□ -1.68
CHD9-201ENST00000219084 NT5DC3Q86UY8 548 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 DDX42Q86XP3 938 aaKnown RBP eCLIP4.54□□□□□ -1.68
CHD9-201ENST00000219084 ABRAQ8N0Z2 381 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 AGBL1Q96MI9 1066 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 KCTD14Q9BQ13 255 aaPredicted RBP4.54□□□□□ -1.68
CHD9-201ENST00000219084 CELF4Q9BZC1 486 aaKnown RBP4.54□□□□□ -1.68
CHD9-201ENST00000219084 RAD18Q9NS91 495 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 TRPM5Q9NZQ8 1165 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 MBD2Q9UBB5 411 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 PRPF19Q9UMS4 504 aaKnown RBP4.54□□□□□ -1.68
CHD9-201ENST00000219084 IRGMA1A4Y4 181 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 CCDC154A6NI56 674 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 CENPXA8MT69 81 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 H3BMM5 538 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 APOC4-APOC2K7ER74 178 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 DNALI1O14645 258 aaPredicted RBP4.54□□□□□ -1.68
CHD9-201ENST00000219084 FGF10O15520 208 aaPredicted RBP4.54□□□□□ -1.68
CHD9-201ENST00000219084 HOXA2O43364 376 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 CNOT3O75175 753 aaKnown RBP4.54□□□□□ -1.68
CHD9-201ENST00000219084 UNC5CO95185 931 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 NTSR2O95665 410 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 APOC2P02655 101 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 MARSP56192 900 aaKnown RBP4.54□□□□□ -1.68
CHD9-201ENST00000219084 SESN2P58004 480 aaPredicted RBP4.54□□□□□ -1.68
CHD9-201ENST00000219084 ROR2Q01974 943 aaKnown RBP4.54□□□□□ -1.68
CHD9-201ENST00000219084 ACVR2BQ13705 512 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 PDIA6Q15084 440 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 RFX4Q33E94 735 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 HABP4Q5JVS0 413 aaKnown RBP4.54□□□□□ -1.68
CHD9-201ENST00000219084 CAMK1DQ8IU85 385 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP4.54□□□□□ -1.68
CHD9-201ENST00000219084 PDPRQ8NCN5 879 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 FAXDC2Q96IV6 333 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 PARK7Q99497 189 aaKnown RBP4.54□□□□□ -1.68
CHD9-201ENST00000219084 UBXN6Q9BZV1 441 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 WDR12Q9GZL7 423 aaKnown RBP4.54□□□□□ -1.68
CHD9-201ENST00000219084 IL22Q9GZX6 179 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 LRRC19Q9H756 370 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 RAVER2Q9HCJ3 691 aaKnown RBP4.54□□□□□ -1.68
CHD9-201ENST00000219084 KLHL3Q9UH77 587 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 ZNRF3Q9ULT6 936 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 TNPO3Q9Y5L0 923 aaKnown RBP4.54□□□□□ -1.68
CHD9-201ENST00000219084 SIPA1L2Q9P2F8 1722 aaPredicted RBP4.54□□□□□ -1.68
CHD9-201ENST00000219084 CYP3A7-CYP3A51PA0A087WV96 503 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 NPHP3-ACAD11A0A0J9YXS1 232 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 PRPF4O43172 522 aaKnown RBP eCLIP4.54□□□□□ -1.68
CHD9-201ENST00000219084 DDHD2O94830 711 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 CYP1A2P05177 515 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 CYP3A7P24462 503 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 MAGEA10P43363 369 aaPredicted RBP4.54□□□□□ -1.68
CHD9-201ENST00000219084 RAB27AP51159 221 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 CLCN2P51788 898 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 CHN2P52757 468 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 NCALDP61601 193 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 RRP1BQ14684 758 aaKnown RBP4.54□□□□□ -1.68
CHD9-201ENST00000219084 ZNF394Q53GI3 561 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 DENND1BQ6P3S1 775 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 MPZL3Q6UWV2 235 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 ZPBP2Q6X784 338 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 SPOCD1Q6ZMY3 1216 aa4.54□□□□□ -1.68
CHD9-201ENST00000219084 CCDC60Q8IWA6 550 aaPredicted RBP4.54□□□□□ -1.68
CHD9-201ENST00000219084 C2orf69Q8N8R5 385 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms