RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 SLITRK1Q96PX8 696 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 TMEM8AQ9HCN3 771 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 MKS1Q9NXB0 559 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 CDH22Q9UJ99 828 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 INPP5FQ9Y2H2 1132 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 PCDHB2Q9Y5E7 798 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 TLL2Q9Y6L7 1015 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 CEP350Q5VT06 3117 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 SDR42E2A6NKP2 422 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 GOLGA8SH3BPF8 625 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 GOLGA8MH3BSY2 632 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 DNAJA2O60884 412 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 KRT37O76014 449 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 IFNB1P01574 187 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 FAM58BPP0C7Q3 252 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 SRGAP2CP0DJJ0 459 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 SRGAP2BP0DMP2 458 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 ETS1P14921 441 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 VARSP26640 1264 aaKnown RBP11.23□□□□□ -0.61
UPF3A-212ENST00000619079 GJC1P36383 396 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 MTTPP55157 894 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 OXCT1P55809 520 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 SLC25A3Q00325 362 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 GCNT1Q02742 428 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 SHROOM1Q2M3G4 852 aaPredicted RBP11.23□□□□□ -0.61
UPF3A-212ENST00000619079 HSF5Q4G112 596 aaPredicted RBP11.23□□□□□ -0.61
UPF3A-212ENST00000619079 ZFYVE27Q5T4F4 411 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 KAZNQ674X7 775 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 Q6ZNX1 250 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 KCTD1Q719H9 257 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 MON1BQ7L1V2 547 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 KBTBD6Q86V97 674 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 WDR75Q8IWA0 830 aaKnown RBP11.23□□□□□ -0.61
UPF3A-212ENST00000619079 FBXL13Q8NEE6 735 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 TRPC4APQ8TEL6 797 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 MKL1Q969V6 931 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 OTUD5Q96G74 571 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 CCDC17Q96LX7 622 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 KCNK16Q96T55 309 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 AMNQ9BXJ7 453 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 RMI1Q9H9A7 625 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 RSL24D1Q9UHA3 163 aaKnown RBP11.23□□□□□ -0.61
UPF3A-212ENST00000619079 IP6K2Q9UHH9 426 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 ZNF112Q9UJU3 913 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 ZBTB21Q9ULJ3 1066 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 PSMD13Q9UNM6 376 aa11.23□□□□□ -0.61
UPF3A-212ENST00000619079 PAPPA2Q9BXP8 1791 aa11.22□□□□□ -0.61
UPF3A-212ENST00000619079 MYH11P35749 1972 aa11.22□□□□□ -0.61
UPF3A-212ENST00000619079 ARHGEF35A5YM69 484 aa11.22□□□□□ -0.61
UPF3A-212ENST00000619079 CAPN8A6NHC0 703 aa11.22□□□□□ -0.61
UPF3A-212ENST00000619079 MEI4A8MW99 385 aa11.22□□□□□ -0.61
UPF3A-212ENST00000619079 FAM189A1O60320 539 aa11.22□□□□□ -0.61
UPF3A-212ENST00000619079 KRT1P04264 644 aa11.22□□□□□ -0.61
UPF3A-212ENST00000619079 C6orf222P0C671 652 aaPredicted RBP11.22□□□□□ -0.61
UPF3A-212ENST00000619079 MYL4P12829 197 aa11.22□□□□□ -0.61
UPF3A-212ENST00000619079 EPHB1P54762 984 aa11.22□□□□□ -0.61
UPF3A-212ENST00000619079 TEX44Q53QW1 395 aa11.22□□□□□ -0.61
UPF3A-212ENST00000619079 LDLRAD1Q5T700 205 aa11.22□□□□□ -0.61
UPF3A-212ENST00000619079 TTC39BQ5VTQ0 682 aaPredicted RBP11.22□□□□□ -0.61
UPF3A-212ENST00000619079 ARCQ7LC44 396 aa11.22□□□□□ -0.61
UPF3A-212ENST00000619079 OTOP1Q7RTM1 612 aa11.22□□□□□ -0.61
UPF3A-212ENST00000619079 PQLC1Q8N2U9 271 aa11.22□□□□□ -0.61
UPF3A-212ENST00000619079 NAT8LQ8N9F0 302 aa11.22□□□□□ -0.61
UPF3A-212ENST00000619079 DHX38Q92620 1227 aaKnown RBP11.22□□□□□ -0.61
UPF3A-212ENST00000619079 CMTM5Q96DZ9 223 aa11.22□□□□□ -0.61
UPF3A-212ENST00000619079 CBWD1Q9BRT8 395 aa11.22□□□□□ -0.61
UPF3A-212ENST00000619079 NRDE2Q9H7Z3 1164 aa11.22□□□□□ -0.61
UPF3A-212ENST00000619079 GINM1Q9NU53 330 aa11.22□□□□□ -0.61
UPF3A-212ENST00000619079 BCAP29Q9UHQ4 241 aa11.22□□□□□ -0.61
UPF3A-212ENST00000619079 POMPQ9Y244 141 aa11.22□□□□□ -0.61
UPF3A-212ENST00000619079 PLLPQ9Y342 182 aa11.22□□□□□ -0.61
UPF3A-212ENST00000619079 MYPNQ86TC9 1320 aa11.22□□□□□ -0.61
UPF3A-212ENST00000619079 KANSL1LA0AUZ9 987 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 H3BNX3 289 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 ADCY3O60266 1144 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 ZC3H11AO75152 810 aaKnown RBP eCLIP11.21□□□□□ -0.61
UPF3A-212ENST00000619079 SNNO75324 88 aaPredicted RBP11.21□□□□□ -0.61
UPF3A-212ENST00000619079 BANF1O75531 89 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 POLR2MP0CAP2 368 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 KRT10P13645 584 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 ATP6V1B1P15313 513 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 NUP107P57740 925 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 UBAP2LQ14157 1087 aaKnown RBP11.21□□□□□ -0.61
UPF3A-212ENST00000619079 CHI3L2Q15782 390 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 FNBP1LQ5T0N5 605 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 RGMBQ6NW40 437 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 TMEM179Q6ZVK1 233 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 SLC26A11Q86WA9 606 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 NUDCD3Q8IVD9 361 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 CPA5Q8WXQ8 436 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 CPT1BQ92523 772 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 SEMA4DQ92854 862 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 OXCT2Q9BYC2 517 aaPredicted RBP11.21□□□□□ -0.61
UPF3A-212ENST00000619079 APOBEC2Q9Y235 224 aaKnown RBP11.21□□□□□ -0.61
UPF3A-212ENST00000619079 USTQ9Y2C2 406 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 ZNF711Q9Y462 761 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 SQORQ9Y6N5 450 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 MATN2O00339 956 aa11.21□□□□□ -0.61
UPF3A-212ENST00000619079 DKC1O60832 514 aaKnown RBP eCLIP11.21□□□□□ -0.61
UPF3A-212ENST00000619079 PCSK6P29122 969 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms