RNA–Protein interactions for RNA: ENST00000601816.3

PNKP-216, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 682 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-216ENST00000601816 HOXC11O43248 304 aaPredicted RBP27.41■■□□□ 1.98
PNKP-216ENST00000601816 RALAP11233 206 aa27.41■■□□□ 1.98
PNKP-216ENST00000601816 CD19P15391 556 aa27.41■■□□□ 1.98
PNKP-216ENST00000601816 CETN1Q12798 172 aa27.41■■□□□ 1.98
PNKP-216ENST00000601816 SGO2Q562F6 1265 aa27.41■■□□□ 1.98
PNKP-216ENST00000601816 C2orf27AQ580R0 203 aa27.41■■□□□ 1.98
PNKP-216ENST00000601816 HTR3DQ70Z44 454 aa27.41■■□□□ 1.98
PNKP-216ENST00000601816 PIGZQ86VD9 579 aa27.41■■□□□ 1.98
PNKP-216ENST00000601816 GAB3Q8WWW8 586 aa27.41■■□□□ 1.98
PNKP-216ENST00000601816 NT5C1BQ96P26 610 aa27.41■■□□□ 1.98
PNKP-216ENST00000601816 ARHGEF4Q9NR80 690 aa27.41■■□□□ 1.98
PNKP-216ENST00000601816 NUDT5Q9UKK9 219 aa27.41■■□□□ 1.98
PNKP-216ENST00000601816 KIAA1549LQ6ZVL6 1849 aa27.4■■□□□ 1.98
PNKP-216ENST00000601816 MDM4O15151 490 aa27.4■■□□□ 1.98
PNKP-216ENST00000601816 KAT7O95251 611 aa27.4■■□□□ 1.98
PNKP-216ENST00000601816 APBB3O95704 486 aa27.4■■□□□ 1.98
PNKP-216ENST00000601816 GNA14O95837 355 aa27.4■■□□□ 1.98
PNKP-216ENST00000601816 RETP07949 1114 aa27.4■■□□□ 1.98
PNKP-216ENST00000601816 KDSRQ06136 332 aa27.4■■□□□ 1.98
PNKP-216ENST00000601816 TTC30AQ86WT1 665 aa27.4■■□□□ 1.98
PNKP-216ENST00000601816 TRIML1Q8N9V2 468 aa27.4■■□□□ 1.98
PNKP-216ENST00000601816 CDK5RAP1Q96SZ6 601 aaKnown RBP27.4■■□□□ 1.98
PNKP-216ENST00000601816 SPHK2Q9NRA0 654 aa27.4■■□□□ 1.98
PNKP-216ENST00000601816 CLIC5Q9NZA1 410 aa27.4■■□□□ 1.98
PNKP-216ENST00000601816 HESX1Q9UBX0 185 aa27.4■■□□□ 1.98
PNKP-216ENST00000601816 TSPAN16Q9UKR8 245 aa27.4■■□□□ 1.98
PNKP-216ENST00000601816 USP18Q9UMW8 372 aa27.4■■□□□ 1.98
PNKP-216ENST00000601816 AXIN1O15169 862 aa27.39■■□□□ 1.98
PNKP-216ENST00000601816 P4HA2O15460 535 aa27.39■■□□□ 1.98
PNKP-216ENST00000601816 RPP40O75818 363 aaKnown RBP27.39■■□□□ 1.98
PNKP-216ENST00000601816 PLA2G4AP47712 749 aa27.39■■□□□ 1.98
PNKP-216ENST00000601816 BCAT1P54687 386 aa27.39■■□□□ 1.98
PNKP-216ENST00000601816 MRPS21P82921 87 aaKnown RBP27.39■■□□□ 1.98
PNKP-216ENST00000601816 MESP2Q0VG99 397 aa27.39■■□□□ 1.98
PNKP-216ENST00000601816 ANO4Q32M45 955 aa27.39■■□□□ 1.98
PNKP-216ENST00000601816 TMEM25Q86YD3 366 aa27.39■■□□□ 1.98
PNKP-216ENST00000601816 ARHGAP18Q8N392 663 aa27.39■■□□□ 1.98
PNKP-216ENST00000601816 ZNF276Q8N554 614 aa27.39■■□□□ 1.98
PNKP-216ENST00000601816 UBR7Q8N806 425 aa27.39■■□□□ 1.98
PNKP-216ENST00000601816 SPTBN4Q9H254 2564 aa27.38■■□□□ 1.97
PNKP-216ENST00000601816 GREM1O60565 184 aa27.38■■□□□ 1.97
PNKP-216ENST00000601816 CCDC192P0DO97 292 aa27.38■■□□□ 1.97
PNKP-216ENST00000601816 VDRP11473 427 aa27.38■■□□□ 1.97
PNKP-216ENST00000601816 GRIA2P42262 883 aa27.38■■□□□ 1.97
PNKP-216ENST00000601816 RAB41Q5JT25 222 aa27.38■■□□□ 1.97
PNKP-216ENST00000601816 SFTPA1Q8IWL2 248 aa27.38■■□□□ 1.97
PNKP-216ENST00000601816 TRIM59Q8IWR1 403 aa27.38■■□□□ 1.97
PNKP-216ENST00000601816 ETFBKMTQ8IXQ9 262 aa27.38■■□□□ 1.97
PNKP-216ENST00000601816 PPM1KQ8N3J5 372 aa27.38■■□□□ 1.97
PNKP-216ENST00000601816 FAM160A2Q8N612 972 aaPredicted RBP27.38■■□□□ 1.97
PNKP-216ENST00000601816 NAT16Q8N8M0 369 aa27.38■■□□□ 1.97
PNKP-216ENST00000601816 KIAA1468Q9P260 1216 aa27.38■■□□□ 1.97
PNKP-216ENST00000601816 KIAA1257Q9ULG3 409 aa27.38■■□□□ 1.97
PNKP-216ENST00000601816 XPO1O14980 1071 aaKnown RBP27.37■■□□□ 1.97
PNKP-216ENST00000601816 TKTL1P51854 596 aa27.37■■□□□ 1.97
PNKP-216ENST00000601816 PDE4CQ08493 712 aa27.37■■□□□ 1.97
PNKP-216ENST00000601816 SPEM2Q0P670 501 aa27.37■■□□□ 1.97
PNKP-216ENST00000601816 BST2Q10589 180 aaKnown RBP27.37■■□□□ 1.97
PNKP-216ENST00000601816 CAMK4Q16566 473 aa27.37■■□□□ 1.97
PNKP-216ENST00000601816 PREPLQ4J6C6 727 aaPredicted RBP27.37■■□□□ 1.97
PNKP-216ENST00000601816 MIB1Q86YT6 1006 aa27.37■■□□□ 1.97
PNKP-216ENST00000601816 CCDC33Q8N5R6 958 aa27.37■■□□□ 1.97
PNKP-216ENST00000601816 TSTD1Q8NFU3 115 aa27.37■■□□□ 1.97
PNKP-216ENST00000601816 RMDN1Q96DB5 314 aa27.37■■□□□ 1.97
PNKP-216ENST00000601816 SRRTQ9BXP5 876 aaKnown RBP27.37■■□□□ 1.97
PNKP-216ENST00000601816 PARD6AQ9NPB6 346 aa27.37■■□□□ 1.97
PNKP-216ENST00000601816 DEC1Q9P2X7 70 aa27.37■■□□□ 1.97
PNKP-216ENST00000601816 RASAL2Q9UJF2 1139 aa27.37■■□□□ 1.97
PNKP-216ENST00000601816 MMP17Q9ULZ9 603 aa27.37■■□□□ 1.97
PNKP-216ENST00000601816 ANTXRLA6NF34 631 aa27.36■■□□□ 1.97
PNKP-216ENST00000601816 TULP3O75386 442 aa27.36■■□□□ 1.97
PNKP-216ENST00000601816 FGFR1OPO95684 399 aaKnown RBP27.36■■□□□ 1.97
PNKP-216ENST00000601816 TGM1P22735 817 aa27.36■■□□□ 1.97
PNKP-216ENST00000601816 TNFRSF4P43489 277 aa27.36■■□□□ 1.97
PNKP-216ENST00000601816 MARSP56192 900 aaKnown RBP27.36■■□□□ 1.97
PNKP-216ENST00000601816 LMNB2Q03252 620 aa27.36■■□□□ 1.97
PNKP-216ENST00000601816 TMEM270Q6UE05 265 aa27.36■■□□□ 1.97
PNKP-216ENST00000601816 CACNA2D4Q7Z3S7 1137 aa27.36■■□□□ 1.97
PNKP-216ENST00000601816 PHTF2Q8N3S3 785 aa27.36■■□□□ 1.97
PNKP-216ENST00000601816 LMO3Q8TAP4 145 aa27.36■■□□□ 1.97
PNKP-216ENST00000601816 LRRC4Q9HBW1 653 aa27.36■■□□□ 1.97
PNKP-216ENST00000601816 EBF1Q9UH73 591 aa27.36■■□□□ 1.97
PNKP-216ENST00000601816 PCDHB4Q9Y5E5 795 aa27.36■■□□□ 1.97
PNKP-216ENST00000601816 UTP18Q9Y5J1 556 aaKnown RBP eCLIP27.36■■□□□ 1.97
PNKP-216ENST00000601816 A0A0A0MRY4 1105 aa27.35■■□□□ 1.97
PNKP-216ENST00000601816 TULP2O00295 520 aa27.35■■□□□ 1.97
PNKP-216ENST00000601816 O00370 1275 aa27.35■■□□□ 1.97
PNKP-216ENST00000601816 LRP3O75074 770 aa27.35■■□□□ 1.97
PNKP-216ENST00000601816 PAEPP09466 180 aa27.35■■□□□ 1.97
PNKP-216ENST00000601816 TIE1P35590 1138 aa27.35■■□□□ 1.97
PNKP-216ENST00000601816 YWHAGP61981 247 aaKnown RBP eCLIP27.35■■□□□ 1.97
PNKP-216ENST00000601816 KCNH2Q12809 1159 aa27.35■■□□□ 1.97
PNKP-216ENST00000601816 HSF5Q4G112 596 aaPredicted RBP27.35■■□□□ 1.97
PNKP-216ENST00000601816 RSRC2Q7L4I2 434 aaKnown RBP27.35■■□□□ 1.97
PNKP-216ENST00000601816 UBA3Q8TBC4 463 aa27.35■■□□□ 1.97
PNKP-216ENST00000601816 BBS2Q9BXC9 721 aa27.35■■□□□ 1.97
PNKP-216ENST00000601816 ULBP1Q9BZM6 244 aa27.35■■□□□ 1.97
PNKP-216ENST00000601816 MYOFQ9NZM1 2061 aa27.35■■□□□ 1.97
PNKP-216ENST00000601816 TBC1D3BA6NDS4 549 aa27.34■■□□□ 1.97
PNKP-216ENST00000601816 STC2O76061 302 aa27.34■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 43.9 ms