RNA–Protein interactions for RNA: ENST00000590499.1

SMAD4-211, Transcript of SMAD family member 4, humanhuman

TSL 4

Gene SMAD4, Length 545 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-211ENST00000590499 CYFIP2Q96F07 1278 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 CYP2S1Q96SQ9 504 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 SRRTQ9BXP5 876 aaKnown RBP11.86□□□□□ -0.51
SMAD4-211ENST00000590499 NUP62CLQ9H1M0 184 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 TRPM5Q9NZQ8 1165 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 ARHGAP26Q9UNA1 814 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 SIT1Q9Y3P8 196 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 PIAS3Q9Y6X2 628 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 FANCMQ8IYD8 2048 aa11.86□□□□□ -0.51
SMAD4-211ENST00000590499 CKMP06732 381 aa11.85□□□□□ -0.51
SMAD4-211ENST00000590499 DCNP07585 359 aaKnown RBP11.85□□□□□ -0.51
SMAD4-211ENST00000590499 USP17L7P0C7H9 530 aa11.85□□□□□ -0.51
SMAD4-211ENST00000590499 FAM200BP0CF97 657 aa11.85□□□□□ -0.51
SMAD4-211ENST00000590499 RFX1P22670 979 aa11.85□□□□□ -0.51
SMAD4-211ENST00000590499 YWHAQP27348 245 aa11.85□□□□□ -0.51
SMAD4-211ENST00000590499 ADORA2BP29275 332 aa11.85□□□□□ -0.51
SMAD4-211ENST00000590499 MAP3K7CLP57077 242 aa11.85□□□□□ -0.51
SMAD4-211ENST00000590499 SLC7A9P82251 487 aa11.85□□□□□ -0.51
SMAD4-211ENST00000590499 ZXDBP98169 803 aa11.85□□□□□ -0.51
SMAD4-211ENST00000590499 PTSQ03393 145 aa11.85□□□□□ -0.51
SMAD4-211ENST00000590499 TNK2Q07912 1038 aa11.85□□□□□ -0.51
SMAD4-211ENST00000590499 DPCR1Q3MIW9 517 aa11.85□□□□□ -0.51
SMAD4-211ENST00000590499 ZNF394Q53GI3 561 aa11.85□□□□□ -0.51
SMAD4-211ENST00000590499 SNX30Q5VWJ9 437 aa11.85□□□□□ -0.51
SMAD4-211ENST00000590499 ZNF852Q6ZMS4 543 aa11.85□□□□□ -0.51
SMAD4-211ENST00000590499 GPRIN1Q7Z2K8 1008 aa11.85□□□□□ -0.51
SMAD4-211ENST00000590499 IRF2BP1Q8IU81 584 aa11.85□□□□□ -0.51
SMAD4-211ENST00000590499 SVOPQ8N4V2 548 aa11.85□□□□□ -0.51
SMAD4-211ENST00000590499 CLDN23Q96B33 292 aa11.85□□□□□ -0.51
SMAD4-211ENST00000590499 FAM122AQ96E09 287 aa11.85□□□□□ -0.51
SMAD4-211ENST00000590499 MSANTD3Q96H12 275 aa11.85□□□□□ -0.51
SMAD4-211ENST00000590499 GBP4Q96PP9 640 aa11.85□□□□□ -0.51
SMAD4-211ENST00000590499 SLITRK1Q96PX8 696 aa11.85□□□□□ -0.51
SMAD4-211ENST00000590499 TRPC7Q9HCX4 862 aa11.85□□□□□ -0.51
SMAD4-211ENST00000590499 PNPLA8Q9NP80 782 aa11.85□□□□□ -0.51
SMAD4-211ENST00000590499 HPS4Q9NQG7 708 aa11.85□□□□□ -0.51
SMAD4-211ENST00000590499 COMMD8Q9NX08 183 aa11.85□□□□□ -0.51
SMAD4-211ENST00000590499 FAM170BA6NMN3 283 aa11.84□□□□□ -0.51
SMAD4-211ENST00000590499 MAN2B1O00754 1011 aa11.84□□□□□ -0.51
SMAD4-211ENST00000590499 HDCP19113 662 aa11.84□□□□□ -0.51
SMAD4-211ENST00000590499 TRIM21P19474 475 aaKnown RBP11.84□□□□□ -0.51
SMAD4-211ENST00000590499 ACO1P21399 889 aaKnown RBP11.84□□□□□ -0.51
SMAD4-211ENST00000590499 TBXAS1P24557 533 aaPredicted RBP11.84□□□□□ -0.51
SMAD4-211ENST00000590499 SOX9P48436 509 aa11.84□□□□□ -0.51
SMAD4-211ENST00000590499 PGFP49763 221 aa11.84□□□□□ -0.51
SMAD4-211ENST00000590499 PDE6CP51160 858 aa11.84□□□□□ -0.51
SMAD4-211ENST00000590499 IFRD2Q12894 506 aaPredicted RBP11.84□□□□□ -0.51
SMAD4-211ENST00000590499 MTF1Q14872 753 aa11.84□□□□□ -0.51
SMAD4-211ENST00000590499 UBXN2BQ14CS0 331 aa11.84□□□□□ -0.51
SMAD4-211ENST00000590499 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.84□□□□□ -0.51
SMAD4-211ENST00000590499 ARHGAP17Q68EM7 881 aa11.84□□□□□ -0.51
SMAD4-211ENST00000590499 RBM43Q6ZSC3 357 aaKnown RBP11.84□□□□□ -0.51
SMAD4-211ENST00000590499 Q6ZVU0 165 aa11.84□□□□□ -0.51
SMAD4-211ENST00000590499 PDZD8Q8NEN9 1154 aa11.84□□□□□ -0.51
SMAD4-211ENST00000590499 CSGALNACT1Q8TDX6 532 aa11.84□□□□□ -0.51
SMAD4-211ENST00000590499 FBXO32Q969P5 355 aa11.84□□□□□ -0.51
SMAD4-211ENST00000590499 CHFRQ96EP1 664 aa11.84□□□□□ -0.51
SMAD4-211ENST00000590499 TMEM176AQ96HP8 235 aa11.84□□□□□ -0.51
SMAD4-211ENST00000590499 NELL2Q99435 816 aa11.84□□□□□ -0.51
SMAD4-211ENST00000590499 DUSP16Q9BY84 665 aa11.84□□□□□ -0.51
SMAD4-211ENST00000590499 RNF38Q9H0F5 515 aa11.84□□□□□ -0.51
SMAD4-211ENST00000590499 C8orf33Q9H7E9 229 aaPredicted RBP11.84□□□□□ -0.51
SMAD4-211ENST00000590499 GKN1Q9NS71 199 aa11.84□□□□□ -0.51
SMAD4-211ENST00000590499 THG1LQ9NWX6 298 aaKnown RBP11.84□□□□□ -0.51
SMAD4-211ENST00000590499 GTSE1Q9NYZ3 720 aa11.84□□□□□ -0.51
SMAD4-211ENST00000590499 GMIPQ9P107 970 aa11.84□□□□□ -0.51
SMAD4-211ENST00000590499 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.84□□□□□ -0.51
SMAD4-211ENST00000590499 RIF1Q5UIP0 2472 aaKnown RBP11.84□□□□□ -0.51
SMAD4-211ENST00000590499 FRYLO94915 3013 aa11.84□□□□□ -0.51
SMAD4-211ENST00000590499 MYOFQ9NZM1 2061 aa11.83□□□□□ -0.51
SMAD4-211ENST00000590499 OTOL1A6NHN0 477 aaPredicted RBP11.83□□□□□ -0.52
SMAD4-211ENST00000590499 SPECC1L-ADORA2AF8WAN1 911 aa11.83□□□□□ -0.52
SMAD4-211ENST00000590499 FGFR1OPO95684 399 aaKnown RBP11.83□□□□□ -0.52
SMAD4-211ENST00000590499 AFPP02771 609 aaKnown RBP11.83□□□□□ -0.52
SMAD4-211ENST00000590499 CCDC192P0DO97 292 aa11.83□□□□□ -0.52
SMAD4-211ENST00000590499 MAGEA9P43362 315 aa11.83□□□□□ -0.52
SMAD4-211ENST00000590499 RPS9P46781 194 aaKnown RBP11.83□□□□□ -0.52
SMAD4-211ENST00000590499 TUBP50607 506 aa11.83□□□□□ -0.52
SMAD4-211ENST00000590499 LRMPQ12912 555 aa11.83□□□□□ -0.52
SMAD4-211ENST00000590499 ITPRIPL2Q3MIP1 535 aa11.83□□□□□ -0.52
SMAD4-211ENST00000590499 TRIM68Q6AZZ1 485 aa11.83□□□□□ -0.52
SMAD4-211ENST00000590499 C1orf228Q6PIY5 440 aa11.83□□□□□ -0.52
SMAD4-211ENST00000590499 TXNDC11Q6PKC3 985 aa11.83□□□□□ -0.52
SMAD4-211ENST00000590499 RALGPS2Q86X27 583 aaPredicted RBP11.83□□□□□ -0.52
SMAD4-211ENST00000590499 KIAA1958Q8N8K9 716 aa11.83□□□□□ -0.52
SMAD4-211ENST00000590499 SH3RF2Q8TEC5 729 aa11.83□□□□□ -0.52
SMAD4-211ENST00000590499 FAM3CQ92520 227 aa11.83□□□□□ -0.52
SMAD4-211ENST00000590499 KAT5Q92993 513 aa11.83□□□□□ -0.52
SMAD4-211ENST00000590499 CNOT6LQ96LI5 555 aaKnown RBP11.83□□□□□ -0.52
SMAD4-211ENST00000590499 HEXIM2Q96MH2 286 aaKnown RBP11.83□□□□□ -0.52
SMAD4-211ENST00000590499 NT5C1BQ96P26 610 aa11.83□□□□□ -0.52
SMAD4-211ENST00000590499 DNAI2Q9GZS0 605 aa11.83□□□□□ -0.52
SMAD4-211ENST00000590499 FBXO44Q9H4M3 255 aa11.83□□□□□ -0.52
SMAD4-211ENST00000590499 MRPS17Q9Y2R5 130 aaKnown RBP11.83□□□□□ -0.52
SMAD4-211ENST00000590499 ZFHX2Q9C0A1 2572 aaPredicted RBP11.83□□□□□ -0.52
SMAD4-211ENST00000590499 H0Y858 1186 aa11.82□□□□□ -0.52
SMAD4-211ENST00000590499 COCHO43405 550 aa11.82□□□□□ -0.52
SMAD4-211ENST00000590499 ARSAP15289 507 aa11.82□□□□□ -0.52
SMAD4-211ENST00000590499 ERCC5P28715 1186 aaPredicted RBP11.82□□□□□ -0.52
SMAD4-211ENST00000590499 KPNA1P52294 538 aaPredicted RBP11.82□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms