RNA–Protein interactions for RNA: ENST00000589216.1

PTPN2-208, Transcript of protein tyrosine phosphatase, non-receptor type 2, human

TSL 3

Gene PTPN2, Length 646 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN2-208	ENST00000589216	PMF1	Q6P1K2	205 aa		10.38	□□□□□ -0.75
PTPN2-208	ENST00000589216	LCLAT1	Q6UWP7	414 aa		10.38	□□□□□ -0.75
PTPN2-208	ENST00000589216	GBP6	Q6ZN66	633 aa		10.38	□□□□□ -0.75
PTPN2-208	ENST00000589216	BBS7	Q8IWZ6	715 aa		10.38	□□□□□ -0.75
PTPN2-208	ENST00000589216	CPA6	Q8N4T0	437 aa		10.38	□□□□□ -0.75
PTPN2-208	ENST00000589216	CLEC4C	Q8WTT0	213 aa		10.38	□□□□□ -0.75
PTPN2-208	ENST00000589216	SHC3	Q92529	594 aa		10.38	□□□□□ -0.75
PTPN2-208	ENST00000589216	KLF16	Q9BXK1	252 aa	Predicted RBP	10.38	□□□□□ -0.75
PTPN2-208	ENST00000589216	HSD3B7	Q9H2F3	369 aa		10.38	□□□□□ -0.75
PTPN2-208	ENST00000589216	NDST4	Q9H3R1	872 aa		10.38	□□□□□ -0.75
PTPN2-208	ENST00000589216	LMAN1L	Q9HAT1	526 aa		10.38	□□□□□ -0.75
PTPN2-208	ENST00000589216	POLR3B	Q9NW08	1133 aa	Predicted RBP	10.38	□□□□□ -0.75
PTPN2-208	ENST00000589216	HESX1	Q9UBX0	185 aa		10.38	□□□□□ -0.75
PTPN2-208	ENST00000589216	CYTH4	Q9UIA0	394 aa		10.38	□□□□□ -0.75
PTPN2-208	ENST00000589216		R4GN57	208 aa		10.38	□□□□□ -0.75
PTPN2-208	ENST00000589216	YJEFN3	A6XGL0	299 aa		10.37	□□□□□ -0.75
PTPN2-208	ENST00000589216		E7ENQ6	273 aa		10.37	□□□□□ -0.75
PTPN2-208	ENST00000589216	TRDMT1	O14717	391 aa	Known RBP	10.37	□□□□□ -0.75
PTPN2-208	ENST00000589216	NFATC1	O95644	943 aa		10.37	□□□□□ -0.75
PTPN2-208	ENST00000589216	ZBED1	O96006	694 aa		10.37	□□□□□ -0.75
PTPN2-208	ENST00000589216	SETSIP	P0DME0	302 aa		10.37	□□□□□ -0.75
PTPN2-208	ENST00000589216	CHRM1	P11229	460 aa	Predicted RBP	10.37	□□□□□ -0.75
PTPN2-208	ENST00000589216	PRKCSH	P14314	528 aa	Predicted RBP	10.37	□□□□□ -0.75
PTPN2-208	ENST00000589216	NBL1	P41271	181 aa		10.37	□□□□□ -0.75
PTPN2-208	ENST00000589216	KLK7	P49862	253 aa		10.37	□□□□□ -0.75
PTPN2-208	ENST00000589216	YWHAG	P61981	247 aa	Known RBP eCLIP	10.37	□□□□□ -0.75
PTPN2-208	ENST00000589216	DMWD	Q09019	674 aa		10.37	□□□□□ -0.75
PTPN2-208	ENST00000589216	KCNMA1	Q12791	1236 aa		10.37	□□□□□ -0.75
PTPN2-208	ENST00000589216	KRT31	Q15323	416 aa		10.37	□□□□□ -0.75
PTPN2-208	ENST00000589216	DHCR24	Q15392	516 aa		10.37	□□□□□ -0.75
PTPN2-208	ENST00000589216	STX1A	Q16623	288 aa		10.37	□□□□□ -0.75
PTPN2-208	ENST00000589216	VWA3B	Q502W6	1294 aa		10.37	□□□□□ -0.75
PTPN2-208	ENST00000589216	TCP11X2	Q5H9J9	407 aa		10.37	□□□□□ -0.75
PTPN2-208	ENST00000589216	C10orf120	Q5SQS8	335 aa		10.37	□□□□□ -0.75
PTPN2-208	ENST00000589216	DENND1B	Q6P3S1	775 aa		10.37	□□□□□ -0.75
PTPN2-208	ENST00000589216	MIB1	Q86YT6	1006 aa		10.37	□□□□□ -0.75
PTPN2-208	ENST00000589216	FAM114A1	Q8IWE2	563 aa		10.37	□□□□□ -0.75
PTPN2-208	ENST00000589216	ENOX1	Q8TC92	643 aa	Known RBP	10.37	□□□□□ -0.75
PTPN2-208	ENST00000589216	NELL2	Q99435	816 aa		10.37	□□□□□ -0.75
PTPN2-208	ENST00000589216	DNAI2	Q9GZS0	605 aa		10.37	□□□□□ -0.75
PTPN2-208	ENST00000589216	NACA2	Q9H009	215 aa		10.37	□□□□□ -0.75
PTPN2-208	ENST00000589216	TJP2	Q9UDY2	1190 aa		10.37	□□□□□ -0.75
PTPN2-208	ENST00000589216	RASAL2	Q9UJF2	1139 aa		10.37	□□□□□ -0.75
PTPN2-208	ENST00000589216	FHOD1	Q9Y613	1164 aa		10.37	□□□□□ -0.75
PTPN2-208	ENST00000589216	E2F8	A0AVK6	867 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	FAM170A	A1A519	330 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	MSI1	O43347	362 aa	Known RBP	10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	LAMTOR5	O43504	91 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	STC2	O76061	302 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	LETM1	O95202	739 aa	Predicted RBP	10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	LCP1	P13796	627 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	EEF1G	P26641	437 aa	Known RBP	10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	GNA15	P30679	374 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	ATP5C1	P36542	298 aa	Known RBP	10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	MAGEA9	P43362	315 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	SLC6A11	P48066	632 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	MRE11	P49959	708 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	GALK1	P51570	392 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	MFAP3	P55082	362 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	DAOA	P59103	153 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	KDSR	Q06136	332 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	TYRO3	Q06418	890 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	EFEMP1	Q12805	493 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	NCAPH	Q15003	741 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	CNGA2	Q16280	664 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	LY6G5C	Q5SRR4	150 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	PM20D1	Q6GTS8	502 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	CAVIN1	Q6NZI2	390 aa	Known RBP	10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	RHBDF2	Q6PJF5	856 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216		Q6ZNB5	142 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	ALYREF	Q86V81	257 aa	Known RBP	10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	DDX42	Q86XP3	938 aa	Known RBP eCLIP	10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	SLC35F5	Q8WV83	523 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	KCTD13	Q8WZ19	329 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	EDEM1	Q92611	657 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	PIWIL1	Q96J94	861 aa	Known RBP	10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	P2RY13	Q9BPV8	354 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	UBXN6	Q9BZV1	441 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	LRRC4	Q9HBW1	653 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	FANCL	Q9NW38	375 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	CLIC5	Q9NZA1	410 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	DNAJC12	Q9UKB3	198 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	SH3BP1	Q9Y3L3	701 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	SPTBN4	Q9H254	2564 aa		10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216	MUC22	E2RYF6	1773 aa	Predicted RBP	10.36	□□□□□ -0.75
PTPN2-208	ENST00000589216		K7ESF4	209 aa		10.35	□□□□□ -0.75
PTPN2-208	ENST00000589216	PES1	O00541	588 aa	Known RBP	10.35	□□□□□ -0.75
PTPN2-208	ENST00000589216	TRIM24	O15164	1050 aa		10.35	□□□□□ -0.75
PTPN2-208	ENST00000589216	EPHB6	O15197	1021 aa		10.35	□□□□□ -0.75
PTPN2-208	ENST00000589216	NCAM2	O15394	837 aa		10.35	□□□□□ -0.75
PTPN2-208	ENST00000589216	THAP12	O43422	761 aa		10.35	□□□□□ -0.75
PTPN2-208	ENST00000589216	RNF40	O75150	1001 aa		10.35	□□□□□ -0.75
PTPN2-208	ENST00000589216	KLKB1	P03952	638 aa		10.35	□□□□□ -0.75
PTPN2-208	ENST00000589216	HMBS	P08397	361 aa		10.35	□□□□□ -0.75
PTPN2-208	ENST00000589216	ADH5	P11766	374 aa		10.35	□□□□□ -0.75
PTPN2-208	ENST00000589216	USP8	P40818	1118 aa		10.35	□□□□□ -0.75
PTPN2-208	ENST00000589216	GPD2	P43304	727 aa		10.35	□□□□□ -0.75
PTPN2-208	ENST00000589216	CSTF1	Q05048	431 aa	Known RBP	10.35	□□□□□ -0.75
PTPN2-208	ENST00000589216	LRRC32	Q14392	662 aa		10.35	□□□□□ -0.75
PTPN2-208	ENST00000589216	CT47A1	Q5JQC4	288 aa	Predicted RBP	10.35	□□□□□ -0.75

Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms