RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 GLRA4Q5JXX5 417 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 LVRNQ6Q4G3 990 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 GET4Q7L5D6 327 aaPredicted RBP10.49□□□□□ -0.73
VPS53-220ENST00000576149 OR6B3Q8NGW1 331 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 LRRC8CQ8TDW0 803 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 OSMRQ99650 979 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 C11orf84Q9BUA3 381 aaPredicted RBP10.49□□□□□ -0.73
VPS53-220ENST00000576149 SLCO1B3Q9NPD5 702 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 RAB6BQ9NRW1 208 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 GJD2Q9UKL4 321 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 HEY1Q9Y5J3 304 aa10.49□□□□□ -0.73
VPS53-220ENST00000576149 SCN1AP35498 2009 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 SMIM35A0A1B0GVV1 85 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 TCRBV9S1A1TA0A576 114 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 A8MXQ7 604 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 KBTBD13C9JR72 458 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 CHUKO15111 745 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 SPAG6O75602 509 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 RECQL4O94761 1208 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 DARSP14868 501 aaKnown RBP10.48□□□□□ -0.73
VPS53-220ENST00000576149 RBL1P28749 1068 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 GBP2P32456 591 aaPredicted RBP10.48□□□□□ -0.73
VPS53-220ENST00000576149 SWT1Q5T5J6 900 aaKnown RBP10.48□□□□□ -0.73
VPS53-220ENST00000576149 TBC1D1Q86TI0 1168 aaPredicted RBP10.48□□□□□ -0.73
VPS53-220ENST00000576149 BANPQ8N9N5 519 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 NPLOC4Q8TAT6 608 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 CENPIQ92674 756 aaPredicted RBP10.48□□□□□ -0.73
VPS53-220ENST00000576149 ALKBH8Q96BT7 664 aaKnown RBP10.48□□□□□ -0.73
VPS53-220ENST00000576149 LPIN3Q9BQK8 851 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 SYT17Q9BSW7 474 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 FRMD8Q9BZ67 464 aaPredicted RBP10.48□□□□□ -0.73
VPS53-220ENST00000576149 DPEP3Q9H4B8 488 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 NXF3Q9H4D5 531 aaKnown RBP10.48□□□□□ -0.73
VPS53-220ENST00000576149 ZNF408Q9H9D4 720 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 UBQLN1Q9UMX0 589 aaKnown RBP10.48□□□□□ -0.73
VPS53-220ENST00000576149 NRCAMQ92823 1304 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 RALGAPA2Q2PPJ7 1873 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 MBLAC1A4D2B0 266 aaPredicted RBP10.48□□□□□ -0.73
VPS53-220ENST00000576149 DCAF8L1A6NGE4 600 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 A6NJR5 290 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 PIRO00625 290 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 TM9SF1O15321 606 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 HCRTO43612 131 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 ZBED1O96006 694 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 SMIM10L2AP0DMW4 78 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 SMIM10L2BP0DMW5 78 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 TFE3P19532 575 aaPredicted RBP10.48□□□□□ -0.73
VPS53-220ENST00000576149 MAGEA6P43360 314 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 RPL34P49207 117 aaKnown RBP10.48□□□□□ -0.73
VPS53-220ENST00000576149 SLC26A9Q7LBE3 791 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 ARCQ7LC44 396 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 PLEKHH3Q7Z736 793 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 CRYBG2Q8N1P7 616 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 AGGF1Q8N302 714 aaeCLIP10.48□□□□□ -0.73
VPS53-220ENST00000576149 C7orf31Q8N865 590 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 ANKLE1Q8NAG6 615 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 ANKRD52Q8NB46 1076 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 KBTBD7Q8WVZ9 684 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 SLC44A1Q8WWI5 657 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 ZNF75CPQ92670 426 aaPredicted RBP10.48□□□□□ -0.73
VPS53-220ENST00000576149 NRDE2Q9H7Z3 1164 aa10.48□□□□□ -0.73
VPS53-220ENST00000576149 GLTPD2A6NH11 291 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 DYNC1LI2O43237 492 aaPredicted RBP10.47□□□□□ -0.73
VPS53-220ENST00000576149 AVILO75366 819 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 F2P00734 622 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 C1QAP02745 245 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 FGFR1P11362 822 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 NQO1P15559 274 aaKnown RBP10.47□□□□□ -0.73
VPS53-220ENST00000576149 AKAP5P24588 427 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 L1CAMP32004 1257 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 SCNN1AP37088 669 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 BCAT1P54687 386 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 ZNF200P98182 395 aaPredicted RBP10.47□□□□□ -0.73
VPS53-220ENST00000576149 BST2Q10589 180 aaKnown RBP10.47□□□□□ -0.73
VPS53-220ENST00000576149 DPYSL2Q16555 572 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 KBTBD12Q3ZCT8 623 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 PPP6R3Q5H9R7 873 aaPredicted RBP10.47□□□□□ -0.73
VPS53-220ENST00000576149 FBXO47Q5MNV8 452 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 FAM182AQ5T1J6 154 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 SYCP2LQ5T4T6 812 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 FAM228AQ86W67 206 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 ZNF276Q8N554 614 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 ZNF513Q8N8E2 541 aaPredicted RBP10.47□□□□□ -0.73
VPS53-220ENST00000576149 CLEC4CQ8WTT0 213 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 TRIM6Q9C030 488 aaPredicted RBP10.47□□□□□ -0.73
VPS53-220ENST00000576149 CD248Q9HCU0 757 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 PNPLA8Q9NP80 782 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 CYLDQ9NQC7 956 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 RNF19AQ9NV58 838 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 ETNK2Q9NVF9 386 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 IQANK1A0A1B0GTG1 560 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 SMIM28A0A1B0GU29 152 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 SPTLC1O15269 473 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 CD4P01730 458 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 PDGFRBP09619 1106 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 CYP2C9P11712 490 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 CCDC130P13994 396 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 CYP2F1P24903 491 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 ADRA1DP25100 572 aa10.47□□□□□ -0.73
VPS53-220ENST00000576149 LMO2P25791 158 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms