RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 NT5DC4Q86YG4 428 aa23.69■■□□□ 1.38
VPS53-211ENST00000571805 FAM13CQ8NE31 585 aa23.69■■□□□ 1.38
VPS53-211ENST00000571805 CFAP36Q96G28 342 aa23.69■■□□□ 1.38
VPS53-211ENST00000571805 SNRNP25Q9BV90 132 aaKnown RBP23.69■■□□□ 1.38
VPS53-211ENST00000571805 CXCL16Q9H2A7 254 aa23.69■■□□□ 1.38
VPS53-211ENST00000571805 KCNK13Q9HB14 408 aa23.69■■□□□ 1.38
VPS53-211ENST00000571805 ETNK2Q9NVF9 386 aa23.69■■□□□ 1.38
VPS53-211ENST00000571805 LNPEPQ9UIQ6 1025 aa23.69■■□□□ 1.38
VPS53-211ENST00000571805 TRIP11Q15643 1979 aa23.68■■□□□ 1.38
VPS53-211ENST00000571805 SCN1AP35498 2009 aa23.68■■□□□ 1.38
VPS53-211ENST00000571805 DIAPH2O60879 1101 aa23.68■■□□□ 1.38
VPS53-211ENST00000571805 DDNO94850 711 aaPredicted RBP23.68■■□□□ 1.38
VPS53-211ENST00000571805 FAXCQ5TGI0 409 aa23.68■■□□□ 1.38
VPS53-211ENST00000571805 SCUBE3Q8IX30 993 aa23.68■■□□□ 1.38
VPS53-211ENST00000571805 ANKRD13AQ8IZ07 590 aa23.68■■□□□ 1.38
VPS53-211ENST00000571805 KIF12Q96FN5 646 aa23.68■■□□□ 1.38
VPS53-211ENST00000571805 TBCBQ99426 244 aa23.68■■□□□ 1.38
VPS53-211ENST00000571805 MRPL45Q9BRJ2 306 aaKnown RBP23.68■■□□□ 1.38
VPS53-211ENST00000571805 TRIM55Q9BYV6 548 aa23.68■■□□□ 1.38
VPS53-211ENST00000571805 TLE6Q9H808 572 aa23.68■■□□□ 1.38
VPS53-211ENST00000571805 NME7Q9Y5B8 376 aa23.68■■□□□ 1.38
VPS53-211ENST00000571805 MTHFD1LQ6UB35 978 aa23.67■■□□□ 1.38
VPS53-211ENST00000571805 SLC35F5Q8WV83 523 aa23.67■■□□□ 1.38
VPS53-211ENST00000571805 ADARB2Q9NS39 739 aaKnown RBP23.67■■□□□ 1.38
VPS53-211ENST00000571805 CXorf49A8MYA2 514 aaPredicted RBP23.67■■□□□ 1.38
VPS53-211ENST00000571805 MAP3K6O95382 1288 aa23.67■■□□□ 1.38
VPS53-211ENST00000571805 TGDSO95455 350 aa23.67■■□□□ 1.38
VPS53-211ENST00000571805 ZBED1O96006 694 aa23.67■■□□□ 1.38
VPS53-211ENST00000571805 PTPN4P29074 926 aa23.67■■□□□ 1.38
VPS53-211ENST00000571805 EPHB2P29323 1055 aa23.67■■□□□ 1.38
VPS53-211ENST00000571805 SDC4P31431 198 aa23.67■■□□□ 1.38
VPS53-211ENST00000571805 TTC39BQ5VTQ0 682 aaPredicted RBP23.67■■□□□ 1.38
VPS53-211ENST00000571805 ACOT1Q86TX2 421 aa23.67■■□□□ 1.38
VPS53-211ENST00000571805 NLRP7Q8WX94 980 aa23.67■■□□□ 1.38
VPS53-211ENST00000571805 MDM4O15151 490 aa23.66■■□□□ 1.38
VPS53-211ENST00000571805 PAPSS1O43252 624 aaPredicted RBP23.66■■□□□ 1.38
VPS53-211ENST00000571805 OSBPP22059 807 aa23.66■■□□□ 1.38
VPS53-211ENST00000571805 PRKCHP24723 683 aa23.66■■□□□ 1.38
VPS53-211ENST00000571805 CCNG1P51959 295 aa23.66■■□□□ 1.38
VPS53-211ENST00000571805 PPIL2Q13356 520 aa23.66■■□□□ 1.38
VPS53-211ENST00000571805 LRRN4Q8WUT4 740 aa23.66■■□□□ 1.38
VPS53-211ENST00000571805 AFG1LQ8WV93 481 aa23.66■■□□□ 1.38
VPS53-211ENST00000571805 TTC17Q96AE7 1141 aa23.66■■□□□ 1.38
VPS53-211ENST00000571805 KLC2Q9H0B6 622 aa23.66■■□□□ 1.38
VPS53-211ENST00000571805 NKX1-2Q9UD57 310 aaPredicted RBP23.66■■□□□ 1.38
VPS53-211ENST00000571805 ZC3H7BQ9UGR2 993 aaKnown RBP23.66■■□□□ 1.38
VPS53-211ENST00000571805 ZNF180Q9UJW8 692 aa23.66■■□□□ 1.38
VPS53-211ENST00000571805 COL1A2P08123 1366 aa23.66■■□□□ 1.38
VPS53-211ENST00000571805 A0A0G2JND7 137 aa23.66■■□□□ 1.38
VPS53-211ENST00000571805 TRIM49D1C9J1S8 452 aa23.66■■□□□ 1.38
VPS53-211ENST00000571805 ZNF286BP0CG31 522 aa23.66■■□□□ 1.38
VPS53-211ENST00000571805 GM2AP17900 193 aa23.66■■□□□ 1.38
VPS53-211ENST00000571805 BGNP21810 368 aa23.66■■□□□ 1.38
VPS53-211ENST00000571805 GRM5P41594 1212 aa23.66■■□□□ 1.38
VPS53-211ENST00000571805 HDAC4P56524 1084 aa23.66■■□□□ 1.38
VPS53-211ENST00000571805 CDHR3Q6ZTQ4 885 aa23.66■■□□□ 1.38
VPS53-211ENST00000571805 PPM1NQ8N819 430 aa23.66■■□□□ 1.38
VPS53-211ENST00000571805 ZNF670Q9BS34 389 aa23.66■■□□□ 1.38
VPS53-211ENST00000571805 C16orf70Q9BSU1 422 aa23.66■■□□□ 1.38
VPS53-211ENST00000571805 HEY2Q9UBP5 337 aa23.66■■□□□ 1.38
VPS53-211ENST00000571805 TRDMT1O14717 391 aaKnown RBP23.65■■□□□ 1.38
VPS53-211ENST00000571805 PPEF2O14830 753 aa23.65■■□□□ 1.38
VPS53-211ENST00000571805 PEX11AO75192 247 aa23.65■■□□□ 1.38
VPS53-211ENST00000571805 IL1BP01584 269 aa23.65■■□□□ 1.38
VPS53-211ENST00000571805 CCDC110Q8TBZ0 833 aa23.65■■□□□ 1.38
VPS53-211ENST00000571805 RSRC1Q96IZ7 334 aaKnown RBP23.65■■□□□ 1.38
VPS53-211ENST00000571805 B3GNT5Q9BYG0 378 aa23.65■■□□□ 1.38
VPS53-211ENST00000571805 SMYD2Q9NRG4 433 aa23.65■■□□□ 1.38
VPS53-211ENST00000571805 FAM49BQ9NUQ9 324 aa23.65■■□□□ 1.38
VPS53-211ENST00000571805 APRTP07741 180 aa23.65■■□□□ 1.38
VPS53-211ENST00000571805 DLDP09622 509 aaKnown RBP23.65■■□□□ 1.38
VPS53-211ENST00000571805 SETSIPP0DME0 302 aa23.65■■□□□ 1.38
VPS53-211ENST00000571805 TFE3P19532 575 aaPredicted RBP23.65■■□□□ 1.38
VPS53-211ENST00000571805 SERPINB4P48594 390 aa23.65■■□□□ 1.38
VPS53-211ENST00000571805 ARFIP2P53365 341 aa23.65■■□□□ 1.38
VPS53-211ENST00000571805 MCUQ8NE86 351 aa23.65■■□□□ 1.38
VPS53-211ENST00000571805 PPTC7Q8NI37 304 aa23.65■■□□□ 1.38
VPS53-211ENST00000571805 SRPK1Q96SB4 655 aaKnown RBP23.65■■□□□ 1.38
VPS53-211ENST00000571805 NRDE2Q9H7Z3 1164 aa23.65■■□□□ 1.38
VPS53-211ENST00000571805 SLC15A5A6NIM6 579 aa23.64■■□□□ 1.38
VPS53-211ENST00000571805 ZNF487B1APH4 448 aa23.64■■□□□ 1.38
VPS53-211ENST00000571805 HNRNPCL1O60812 293 aaKnown RBP23.64■■□□□ 1.38
VPS53-211ENST00000571805 DNAJC6O75061 913 aa23.64■■□□□ 1.38
VPS53-211ENST00000571805 SNRPAP09012 282 aaKnown RBP23.64■■□□□ 1.38
VPS53-211ENST00000571805 SESTD1Q86VW0 696 aa23.64■■□□□ 1.38
VPS53-211ENST00000571805 CTAGE3PQ8IX95 158 aa23.64■■□□□ 1.38
VPS53-211ENST00000571805 ZNF570Q96NI8 536 aa23.64■■□□□ 1.38
VPS53-211ENST00000571805 RNPEPL1Q9HAU8 725 aa23.64■■□□□ 1.38
VPS53-211ENST00000571805 SNX9Q9Y5X1 595 aa23.64■■□□□ 1.38
VPS53-211ENST00000571805 KAT6AQ92794 2004 aa23.64■■□□□ 1.38
VPS53-211ENST00000571805 KLF11O14901 512 aa23.64■■□□□ 1.37
VPS53-211ENST00000571805 MAGEA3P43357 314 aa23.64■■□□□ 1.37
VPS53-211ENST00000571805 PPP6R3Q5H9R7 873 aaPredicted RBP23.64■■□□□ 1.37
VPS53-211ENST00000571805 MARCH8Q5T0T0 291 aa23.64■■□□□ 1.37
VPS53-211ENST00000571805 SHCBP1Q8NEM2 672 aa23.64■■□□□ 1.37
VPS53-211ENST00000571805 SKA1Q96BD8 255 aa23.64■■□□□ 1.37
VPS53-211ENST00000571805 PTCD3Q96EY7 689 aaKnown RBP23.64■■□□□ 1.37
VPS53-211ENST00000571805 ZMAT2Q96NC0 199 aaKnown RBP23.64■■□□□ 1.37
VPS53-211ENST00000571805 MTO1Q9Y2Z2 717 aaKnown RBP23.64■■□□□ 1.37
VPS53-211ENST00000571805 COPEO14579 308 aa23.63■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms