RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 MMADHCQ9H3L0 296 aaPredicted RBP5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 ERVMER34-1Q9H9K5 563 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 TDP1Q9NUW8 608 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 ADPRHL2Q9NX46 363 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 ZDHHC7Q9NXF8 308 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 ZNF212Q9UDV6 495 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 TELO2Q9Y4R8 837 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 MAP3K5Q99683 1374 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 TNS2Q63HR2 1409 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 A0A0U1RQK1 487 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 ZNF320A2RRD8 509 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 E7EVH7 732 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 TGFB1P01137 390 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 MMEP08473 750 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 HOXB7P09629 217 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 SNRPA1P09661 255 aaKnown RBP5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 UBL4AP11441 157 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 HLA-DPA1P20036 260 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 RAB6AP20340 208 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 MALP21145 153 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 MAPK3P27361 379 aaPredicted RBP5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 TMPOP42166 694 aaKnown RBP5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 MLLT6P55198 1093 aaPredicted RBP5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 POLE2P56282 527 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 CYP27A1Q02318 531 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 CTBP1Q13363 440 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 PUM1Q14671 1186 aaKnown RBP eCLIP5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 ZNF805Q5CZA5 627 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 KIAA1841Q6NSI8 718 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 C16orf87Q6PH81 154 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 NFXL1Q6ZNB6 911 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 KIAA0408Q6ZU52 694 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 CILP2Q8IUL8 1156 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 SMYD4Q8IYR2 804 aaPredicted RBP5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 CNTROBQ8N137 903 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 FBXL6Q8N531 539 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 IL17RDQ8NFM7 739 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 BICD2Q8TD16 824 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 DENND1AQ8TEH3 1009 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 EZH1Q92800 747 aaPredicted RBP5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 SDCCAG3Q96C92 435 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 MFSD14AQ96MC6 490 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 C1orf43Q9BWL3 253 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 DPH1Q9BZG8 443 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 DNAI2Q9GZS0 605 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 ZCWPW1Q9H0M4 648 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 PCDHAC1Q9H158 963 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 PIDD1Q9HB75 910 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 NOD2Q9HC29 1040 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 RXFP3Q9NSD7 469 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 RIC8BQ9NVN3 520 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 PI4KBQ9UBF8 816 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 RGS17Q9UGC6 210 aaPredicted RBP5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 SRRDQ9UH36 339 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 LAMP5Q9UJQ1 280 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 ZMYND8Q9ULU4 1186 aaPredicted RBP5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 CORO1CQ9ULV4 474 aaPredicted RBP5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 DUSP12Q9UNI6 340 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 ACTL7BQ9Y614 415 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 IL16Q14005 1332 aa5.58□□□□□ -1.52
VPS35P1-201ENST00000563400 MYOM1P52179 1685 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 SYNJ2BP-COX16A0A087WUM0 186 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 VWA3AA6NCI4 1184 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 PRAMEF25A6NGN4 478 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 H7BY64 318 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 PYCARD-AS1I3L0S3 204 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 RNMTO43148 476 aaKnown RBP5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 TXNL1O43396 289 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 SGTAO43765 313 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 TBC1D4O60343 1298 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 SYNCRIPO60506 623 aaKnown RBP5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 KINO60870 393 aaKnown RBP5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 CAMTA2O94983 1202 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 CPA1P15085 419 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 PECAM1P16284 738 aaPredicted RBP5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 PTPN1P18031 435 aaKnown RBP5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 TFEBP19484 476 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 FBLN1P23142 703 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 KLRK1P26718 216 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 BMP8BP34820 402 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 PGM1P36871 562 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 GARSP41250 739 aaKnown RBP5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 PAFAH1B1P43034 410 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 SLC6A9P48067 706 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 CD97P48960 835 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 SOX8P57073 446 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 RPP30P78346 268 aaKnown RBP5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 ATP8B2P98198 1209 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 CDC42EP1Q00587 391 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 EXOSC9Q06265 439 aaKnown RBP5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 LRRC74AQ0VAA2 488 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 SEC23BQ15437 767 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 MTHFSDQ2M296 383 aaKnown RBP5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 BTBD16Q32M84 506 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 TTC38Q5R3I4 469 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 CDPF1Q6NVV7 123 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 CAVIN1Q6NZI2 390 aaKnown RBP5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 SYT13Q7L8C5 426 aa5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 CCAR2Q8N163 923 aaKnown RBP5.57□□□□□ -1.52
VPS35P1-201ENST00000563400 ANKRD35Q8N283 1001 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms