RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 RSPH3Q86UC2 560 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 TLK2Q86UE8 772 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 SLC41A1Q8IVJ1 513 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 C12orf50Q8NA57 414 aaPredicted RBP5.5□□□□□ -1.53
LDLR-209ENST00000558528 CCDC150Q8NCX0 1101 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 RCBTB1Q8NDN9 531 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 ZNF397Q8NF99 534 aaPredicted RBP5.5□□□□□ -1.53
LDLR-209ENST00000558528 LRRC15Q8TF66 581 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 AFG1LQ8WV93 481 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 CCDC51Q96ER9 411 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 RAX2Q96IS3 184 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 PPM1MQ96MI6 270 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 FCRL3Q96P31 734 aaPredicted RBP5.5□□□□□ -1.53
LDLR-209ENST00000558528 MAP7D2Q96T17 732 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 PCYT2Q99447 389 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 ELF4Q99607 663 aaPredicted RBP5.5□□□□□ -1.53
LDLR-209ENST00000558528 TUBGCP2Q9BSJ2 902 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 MTG1Q9BT17 334 aaPredicted RBP5.5□□□□□ -1.53
LDLR-209ENST00000558528 MCMBPQ9BTE3 642 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 NFKBIZQ9BYH8 718 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 TTYH1Q9H313 450 aaPredicted RBP5.5□□□□□ -1.53
LDLR-209ENST00000558528 KCTD10Q9H3F6 313 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 SAMSN1Q9NSI8 373 aaKnown RBP5.5□□□□□ -1.53
LDLR-209ENST00000558528 KCNK4Q9NYG8 393 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 IFNKQ9P0W0 207 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 WRAP73Q9P2S5 460 aaPredicted RBP5.5□□□□□ -1.53
LDLR-209ENST00000558528 ARMCX3Q9UH62 379 aaPredicted RBP5.5□□□□□ -1.53
LDLR-209ENST00000558528 TMEFF2Q9UIK5 374 aaPredicted RBP5.5□□□□□ -1.53
LDLR-209ENST00000558528 CBLCQ9ULV8 474 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 ACTL7BQ9Y614 415 aa5.5□□□□□ -1.53
LDLR-209ENST00000558528 ITIH6Q6UXX5 1313 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 DCHS1Q96JQ0 3298 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 BAZ2BQ9UIF8 2168 aaKnown RBP5.49□□□□□ -1.53
LDLR-209ENST00000558528 MYH6P13533 1939 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 A0A087WWV3 80 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 DENND3A2RUS2 1198 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 CAPN8A6NHC0 703 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 H7BY64 318 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 PES1O00541 588 aaKnown RBP5.49□□□□□ -1.53
LDLR-209ENST00000558528 P4HA2O15460 535 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 CCP110O43303 1012 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 EXOC3O60645 756 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 NDUFS2O75306 463 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 UBXN7O94888 489 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 PRPF6O94906 941 aaKnown RBP5.49□□□□□ -1.53
LDLR-209ENST00000558528 HMGCRP04035 888 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 NR3C1P04150 777 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 INSRRP14616 1297 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 SLC9A1P19634 815 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 SFPQP23246 707 aaKnown RBP eCLIP5.49□□□□□ -1.53
LDLR-209ENST00000558528 NR2F2P24468 414 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 MSNP26038 577 aaKnown RBP5.49□□□□□ -1.53
LDLR-209ENST00000558528 PEX2P28328 305 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 NMT1P30419 496 aaKnown RBP5.49□□□□□ -1.53
LDLR-209ENST00000558528 NPTX2P47972 431 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 LIG4P49917 911 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 COPB1P53618 953 aaKnown RBP5.49□□□□□ -1.53
LDLR-209ENST00000558528 AP3M2P53677 418 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 RPL11P62913 178 aaKnown RBP5.49□□□□□ -1.53
LDLR-209ENST00000558528 UBXN1Q04323 297 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 PPFIA1Q13136 1202 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 SURF1Q15526 300 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 MAPK6Q16659 721 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 PGS1Q32NB8 556 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 VWA3BQ502W6 1294 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 ZCWPW2Q504Y3 356 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 FIGNQ5HY92 759 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 TMEM31Q5JXX7 168 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 PLA2G4FQ68DD2 849 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 SPECC1LQ69YQ0 1117 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 EFCAB12Q6NXP0 572 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 ARMCX5Q6P1M9 558 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 CC2D1AQ6P1N0 951 aaPredicted RBP5.49□□□□□ -1.53
LDLR-209ENST00000558528 LVRNQ6Q4G3 990 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 CRTC3Q6UUV7 619 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 ZPBP2Q6X784 338 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 ACAD11Q709F0 780 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 INTS8Q75QN2 995 aaKnown RBP5.49□□□□□ -1.53
LDLR-209ENST00000558528 MAEAQ7L5Y9 396 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 TRMT1LQ7Z2T5 733 aaKnown RBP5.49□□□□□ -1.53
LDLR-209ENST00000558528 ZNF410Q86VK4 478 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 NELFCDQ8IXH7 590 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 ZC3H3Q8IXZ2 948 aaKnown RBP5.49□□□□□ -1.53
LDLR-209ENST00000558528 PRR18Q8N4B5 295 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 DTWD2Q8NBA8 298 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 XXYLT1Q8NBI6 393 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 C2CD4AQ8NCU7 369 aaPredicted RBP5.49□□□□□ -1.53
LDLR-209ENST00000558528 C1orf131Q8NDD1 294 aaKnown RBP5.49□□□□□ -1.53
LDLR-209ENST00000558528 TMEM161BQ8NDZ6 487 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 CCDC112Q8NEF3 446 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 PIWIL2Q8TC59 973 aaKnown RBP5.49□□□□□ -1.53
LDLR-209ENST00000558528 LRTOMTQ8WZ04 291 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 BICD1Q96G01 975 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 PAWRQ96IZ0 340 aaKnown RBP5.49□□□□□ -1.53
LDLR-209ENST00000558528 CNOT6LQ96LI5 555 aaKnown RBP5.49□□□□□ -1.53
LDLR-209ENST00000558528 FAM81BQ96LP2 452 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 RIPOR3Q96MK2 946 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 C16orf70Q9BSU1 422 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 STRA6Q9BX79 667 aa5.49□□□□□ -1.53
LDLR-209ENST00000558528 EDEM3Q9BZQ6 932 aa5.49□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms