RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 ERV3-1Q14264 604 aa4.61□□□□□ -1.67
SCFD1-216ENST00000555550 GRM3Q14832 879 aa4.61□□□□□ -1.67
SCFD1-216ENST00000555550 TWIST1Q15672 202 aa4.61□□□□□ -1.67
SCFD1-216ENST00000555550 DENND2CQ68D51 928 aa4.61□□□□□ -1.67
SCFD1-216ENST00000555550 ZNF813Q6ZN06 617 aa4.61□□□□□ -1.67
SCFD1-216ENST00000555550 YAF2Q8IY57 180 aa4.61□□□□□ -1.67
SCFD1-216ENST00000555550 TSR2Q969E8 191 aaKnown RBP4.61□□□□□ -1.67
SCFD1-216ENST00000555550 RSPRY1Q96DX4 576 aa4.61□□□□□ -1.67
SCFD1-216ENST00000555550 ZBTB45Q96K62 511 aaPredicted RBP4.61□□□□□ -1.67
SCFD1-216ENST00000555550 LYZL4Q96KX0 146 aa4.61□□□□□ -1.67
SCFD1-216ENST00000555550 SNX18Q96RF0 628 aa4.61□□□□□ -1.67
SCFD1-216ENST00000555550 HIPK2Q9H2X6 1198 aa4.61□□□□□ -1.67
SCFD1-216ENST00000555550 DNMT3BQ9UBC3 853 aaKnown RBP4.61□□□□□ -1.67
SCFD1-216ENST00000555550 SQORQ9Y6N5 450 aa4.61□□□□□ -1.67
SCFD1-216ENST00000555550 GTPBP1O00178 669 aaKnown RBP4.6□□□□□ -1.67
SCFD1-216ENST00000555550 RRP9O43818 475 aaKnown RBP4.6□□□□□ -1.67
SCFD1-216ENST00000555550 OAZ2O95190 189 aa4.6□□□□□ -1.67
SCFD1-216ENST00000555550 ZBED1O96006 694 aa4.6□□□□□ -1.67
SCFD1-216ENST00000555550 FGAP02671 866 aa4.6□□□□□ -1.67
SCFD1-216ENST00000555550 TPH1P17752 444 aa4.6□□□□□ -1.67
SCFD1-216ENST00000555550 ACVR2AP27037 513 aa4.6□□□□□ -1.67
SCFD1-216ENST00000555550 PEX2P28328 305 aa4.6□□□□□ -1.67
SCFD1-216ENST00000555550 UQCRC1P31930 480 aa4.6□□□□□ -1.67
SCFD1-216ENST00000555550 CPT1AP50416 773 aa4.6□□□□□ -1.67
SCFD1-216ENST00000555550 PGDP52209 483 aa4.6□□□□□ -1.67
SCFD1-216ENST00000555550 SEMA3AQ14563 771 aa4.6□□□□□ -1.67
SCFD1-216ENST00000555550 RNASE12Q5GAN4 147 aaKnown RBP4.6□□□□□ -1.67
SCFD1-216ENST00000555550 C14orf80Q86SX3 495 aa4.6□□□□□ -1.67
SCFD1-216ENST00000555550 ZBTB8BQ8NAP8 495 aaPredicted RBP4.6□□□□□ -1.67
SCFD1-216ENST00000555550 IPCEF1Q8WWN9 437 aaPredicted RBP4.6□□□□□ -1.67
SCFD1-216ENST00000555550 CUL5Q93034 780 aa4.6□□□□□ -1.67
SCFD1-216ENST00000555550 APIPQ96GX9 242 aa4.6□□□□□ -1.67
SCFD1-216ENST00000555550 CCDC17Q96LX7 622 aa4.6□□□□□ -1.67
SCFD1-216ENST00000555550 VN1R3Q9BXE9 311 aa4.6□□□□□ -1.67
SCFD1-216ENST00000555550 TRIM5Q9C035 493 aa4.6□□□□□ -1.67
SCFD1-216ENST00000555550 VPS33BQ9H267 617 aa4.6□□□□□ -1.67
SCFD1-216ENST00000555550 SNX15Q9NRS6 342 aa4.6□□□□□ -1.67
SCFD1-216ENST00000555550 TMEM184CQ9NVA4 438 aa4.6□□□□□ -1.67
SCFD1-216ENST00000555550 LPAR3Q9UBY5 353 aa4.6□□□□□ -1.67
SCFD1-216ENST00000555550 ZNF112Q9UJU3 913 aa4.6□□□□□ -1.67
SCFD1-216ENST00000555550 MID2Q9UJV3 735 aa4.6□□□□□ -1.67
SCFD1-216ENST00000555550 FER1L4A9Z1Z3 1794 aa4.6□□□□□ -1.67
SCFD1-216ENST00000555550 CD3EAPO15446 510 aaKnown RBP4.59□□□□□ -1.67
SCFD1-216ENST00000555550 INMTO95050 263 aa4.59□□□□□ -1.67
SCFD1-216ENST00000555550 CRYABP02511 175 aaKnown RBP4.59□□□□□ -1.67
SCFD1-216ENST00000555550 HGFP14210 728 aa4.59□□□□□ -1.67
SCFD1-216ENST00000555550 PHKG2P15735 406 aa4.59□□□□□ -1.67
SCFD1-216ENST00000555550 CREB1P16220 341 aa4.59□□□□□ -1.67
SCFD1-216ENST00000555550 COPB1P53618 953 aaKnown RBP4.59□□□□□ -1.67
SCFD1-216ENST00000555550 ZNF91Q05481 1191 aa4.59□□□□□ -1.67
SCFD1-216ENST00000555550 FAM187BQ17R55 369 aa4.59□□□□□ -1.67
SCFD1-216ENST00000555550 KRTAP27-1Q3LI81 207 aa4.59□□□□□ -1.67
SCFD1-216ENST00000555550 C9orf47Q6ZRZ4 202 aa4.59□□□□□ -1.67
SCFD1-216ENST00000555550 PTCHD4Q6ZW05 846 aa4.59□□□□□ -1.67
SCFD1-216ENST00000555550 USP43Q70EL4 1123 aa4.59□□□□□ -1.67
SCFD1-216ENST00000555550 SFTPA1Q8IWL2 248 aa4.59□□□□□ -1.67
SCFD1-216ENST00000555550 KRT78Q8N1N4 520 aa4.59□□□□□ -1.67
SCFD1-216ENST00000555550 FYTTD1Q96QD9 318 aaKnown RBP4.59□□□□□ -1.67
SCFD1-216ENST00000555550 PRDM11Q9NQV5 511 aa4.59□□□□□ -1.67
SCFD1-216ENST00000555550 POT1Q9NUX5 634 aa4.59□□□□□ -1.67
SCFD1-216ENST00000555550 COL20A1Q9P218 1284 aa4.59□□□□□ -1.67
SCFD1-216ENST00000555550 SNX13Q9Y5W8 968 aa4.59□□□□□ -1.67
SCFD1-216ENST00000555550 AQP7P3A6NL99 342 aa4.58□□□□□ -1.68
SCFD1-216ENST00000555550 TMEM232C9JQI7 657 aa4.58□□□□□ -1.68
SCFD1-216ENST00000555550 M0R3H8 397 aa4.58□□□□□ -1.68
SCFD1-216ENST00000555550 EXOC5O00471 708 aa4.58□□□□□ -1.68
SCFD1-216ENST00000555550 A1BGP04217 495 aa4.58□□□□□ -1.68
SCFD1-216ENST00000555550 TXNP10599 105 aaKnown RBP4.58□□□□□ -1.68
SCFD1-216ENST00000555550 PSG1P11464 419 aa4.58□□□□□ -1.68
SCFD1-216ENST00000555550 YY1P25490 414 aa4.58□□□□□ -1.68
SCFD1-216ENST00000555550 CARSP49589 748 aaKnown RBP4.58□□□□□ -1.68
SCFD1-216ENST00000555550 GATMP50440 423 aa4.58□□□□□ -1.68
SCFD1-216ENST00000555550 TIRAPP58753 221 aa4.58□□□□□ -1.68
SCFD1-216ENST00000555550 PSG6Q00889 435 aa4.58□□□□□ -1.68
SCFD1-216ENST00000555550 GBX1Q14549 363 aa4.58□□□□□ -1.68
SCFD1-216ENST00000555550 ZNF750Q32MQ0 723 aa4.58□□□□□ -1.68
SCFD1-216ENST00000555550 TMEM65Q6PI78 240 aa4.58□□□□□ -1.68
SCFD1-216ENST00000555550 CHST15Q7LFX5 561 aaPredicted RBP4.58□□□□□ -1.68
SCFD1-216ENST00000555550 SESTD1Q86VW0 696 aa4.58□□□□□ -1.68
SCFD1-216ENST00000555550 NGDNQ8NEJ9 315 aaKnown RBP4.58□□□□□ -1.68
SCFD1-216ENST00000555550 ZNF548Q8NEK5 533 aaPredicted RBP4.58□□□□□ -1.68
SCFD1-216ENST00000555550 TTC8Q8TAM2 541 aa4.58□□□□□ -1.68
SCFD1-216ENST00000555550 ADAMTS18Q8TE60 1221 aa4.58□□□□□ -1.68
SCFD1-216ENST00000555550 HS6ST2Q96MM7 605 aa4.58□□□□□ -1.68
SCFD1-216ENST00000555550 SIGLEC11Q96RL6 698 aa4.58□□□□□ -1.68
SCFD1-216ENST00000555550 CHST8Q9H2A9 424 aa4.58□□□□□ -1.68
SCFD1-216ENST00000555550 DHX36Q9H2U1 1008 aaKnown RBP4.58□□□□□ -1.68
SCFD1-216ENST00000555550 OBP2AQ9NY56 170 aa4.58□□□□□ -1.68
SCFD1-216ENST00000555550 MGAT4CQ9UBM8 478 aa4.58□□□□□ -1.68
SCFD1-216ENST00000555550 PCDHGB6Q9Y5F9 930 aa4.58□□□□□ -1.68
SCFD1-216ENST00000555550 FAM90A8PA6NJQ4 464 aa4.57□□□□□ -1.68
SCFD1-216ENST00000555550 PPM1GO15355 546 aaPredicted RBP4.57□□□□□ -1.68
SCFD1-216ENST00000555550 SMAD6O43541 496 aaKnown RBP4.57□□□□□ -1.68
SCFD1-216ENST00000555550 TMPRSS11DO60235 418 aa4.57□□□□□ -1.68
SCFD1-216ENST00000555550 SNX2O60749 519 aa4.57□□□□□ -1.68
SCFD1-216ENST00000555550 RNF8O76064 485 aa4.57□□□□□ -1.68
SCFD1-216ENST00000555550 HRGP04196 525 aa4.57□□□□□ -1.68
SCFD1-216ENST00000555550 FAM90A13PP0C7W8 464 aa4.57□□□□□ -1.68
SCFD1-216ENST00000555550 FAM90A24PP0C7X0 464 aa4.57□□□□□ -1.68
SCFD1-216ENST00000555550 CD19P15391 556 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms