RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 SALL4Q9UJQ4 1053 aa11.75□□□□□ -0.53
SHMT2-216ENST00000554975 TTC7AQ9ULT0 858 aaPredicted RBP11.75□□□□□ -0.53
SHMT2-216ENST00000554975 FLNBO75369 2602 aaKnown RBP11.75□□□□□ -0.53
SHMT2-216ENST00000554975 PI4KAP42356 2102 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 ARHGEF37A1IGU5 675 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 SLC38A8A6NNN8 435 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 SOBPA7XYQ1 873 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 H3BQF6 201 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 KCNK3O14649 394 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 SLC16A4O15374 487 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 HEXIM1O94992 359 aaKnown RBP11.74□□□□□ -0.53
SHMT2-216ENST00000554975 SEC24AO95486 1093 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 GZMAP12544 262 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 PTPN2P17706 415 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 RAP1GAPP47736 663 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 NPTX2P47972 431 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 PXNP49023 591 aaPredicted RBP11.74□□□□□ -0.53
SHMT2-216ENST00000554975 PDE6CP51160 858 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 ATF7IP2Q5U623 682 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 EEF1DP3Q658K8 133 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 MAATS1Q7Z4T9 603 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 APBB1IPQ7Z5R6 666 aaPredicted RBP11.74□□□□□ -0.53
SHMT2-216ENST00000554975 DAAM2Q86T65 1068 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 RASGEF1CQ8N431 466 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 UBL4BQ8N7F7 174 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 CCDC26Q8TAB7 109 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 SLC30A5Q8TAD4 765 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 TTC8Q8TAM2 541 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 GATA6Q92908 595 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 TRIM11Q96F44 468 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 PACSIN1Q9BY11 444 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 ADAM33Q9BZ11 813 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 CCDC113Q9H0I3 377 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 SNTG2Q9NY99 539 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 TBX20Q9UMR3 447 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 LHX6Q9UPM6 363 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 COQ4Q9Y3A0 265 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 IGSF10Q6WRI0 2623 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 ANK1P16157 1881 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 ZNF638Q14966 1978 aaKnown RBP11.74□□□□□ -0.53
SHMT2-216ENST00000554975 GON4LQ3T8J9 2241 aa11.74□□□□□ -0.53
SHMT2-216ENST00000554975 EXTL3O43909 919 aa11.73□□□□□ -0.53
SHMT2-216ENST00000554975 RECQL4O94761 1208 aa11.73□□□□□ -0.53
SHMT2-216ENST00000554975 MTA2O94776 668 aa11.73□□□□□ -0.53
SHMT2-216ENST00000554975 LRG1P02750 347 aa11.73□□□□□ -0.53
SHMT2-216ENST00000554975 EDN1P05305 212 aa11.73□□□□□ -0.53
SHMT2-216ENST00000554975 IVLP07476 585 aa11.73□□□□□ -0.53
SHMT2-216ENST00000554975 BRCC3P46736 316 aa11.73□□□□□ -0.53
SHMT2-216ENST00000554975 NOVA1P51513 510 aaKnown RBP11.73□□□□□ -0.53
SHMT2-216ENST00000554975 GALCP54803 685 aa11.73□□□□□ -0.53
SHMT2-216ENST00000554975 ROR1Q01973 937 aa11.73□□□□□ -0.53
SHMT2-216ENST00000554975 ZNF252P-AS1Q0IIN9 211 aa11.73□□□□□ -0.53
SHMT2-216ENST00000554975 SNRNP35Q16560 246 aaKnown RBP11.73□□□□□ -0.53
SHMT2-216ENST00000554975 DENND4CQ5VZ89 1909 aa11.73□□□□□ -0.53
SHMT2-216ENST00000554975 SND1Q7KZF4 910 aaKnown RBP eCLIP11.73□□□□□ -0.53
SHMT2-216ENST00000554975 GPIHBP1Q8IV16 184 aa11.73□□□□□ -0.53
SHMT2-216ENST00000554975 GPD1LQ8N335 351 aa11.73□□□□□ -0.53
SHMT2-216ENST00000554975 C3orf58Q8NDZ4 430 aa11.73□□□□□ -0.53
SHMT2-216ENST00000554975 TMEM161BQ8NDZ6 487 aa11.73□□□□□ -0.53
SHMT2-216ENST00000554975 SMARCD2Q92925 531 aa11.73□□□□□ -0.53
SHMT2-216ENST00000554975 LRRC45Q96CN5 670 aa11.73□□□□□ -0.53
SHMT2-216ENST00000554975 AGPAT1Q99943 283 aa11.73□□□□□ -0.53
SHMT2-216ENST00000554975 CBWD1Q9BRT8 395 aa11.73□□□□□ -0.53
SHMT2-216ENST00000554975 NTPCRQ9BSD7 190 aaKnown RBP11.73□□□□□ -0.53
SHMT2-216ENST00000554975 TCHPQ9BT92 498 aa11.73□□□□□ -0.53
SHMT2-216ENST00000554975 LRRC1Q9BTT6 524 aa11.73□□□□□ -0.53
SHMT2-216ENST00000554975 MRPL4Q9BYD3 311 aaKnown RBP11.73□□□□□ -0.53
SHMT2-216ENST00000554975 RAB17Q9H0T7 212 aa11.73□□□□□ -0.53
SHMT2-216ENST00000554975 GOLGA2P5Q9HBQ8 144 aa11.73□□□□□ -0.53
SHMT2-216ENST00000554975 GDF3Q9NR23 364 aa11.73□□□□□ -0.53
SHMT2-216ENST00000554975 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.73□□□□□ -0.53
SHMT2-216ENST00000554975 ZKSCAN7Q9P0L1 754 aaPredicted RBP11.73□□□□□ -0.53
SHMT2-216ENST00000554975 VPS18Q9P253 973 aa11.73□□□□□ -0.53
SHMT2-216ENST00000554975 RASAL2Q9UJF2 1139 aa11.73□□□□□ -0.53
SHMT2-216ENST00000554975 TMEM59LQ9UK28 342 aa11.73□□□□□ -0.53
SHMT2-216ENST00000554975 FREM2Q5SZK8 3169 aa11.73□□□□□ -0.53
SHMT2-216ENST00000554975 LRRIQ3A6PVS8 624 aaPredicted RBP11.72□□□□□ -0.53
SHMT2-216ENST00000554975 HEPACAM2A8MVW5 462 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 HNRNPDLO14979 420 aaKnown RBP11.72□□□□□ -0.53
SHMT2-216ENST00000554975 CEP104O60308 925 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 RNF40O75150 1001 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 RTN2O75298 545 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 ABLIM3O94929 683 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 LDHAP00338 332 aaKnown RBP11.72□□□□□ -0.53
SHMT2-216ENST00000554975 THP07101 528 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 HARSP12081 509 aaKnown RBP11.72□□□□□ -0.53
SHMT2-216ENST00000554975 HOXA6P31267 233 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 CXCR5P32302 372 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 MPLP40238 635 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 MATR3P43243 847 aaKnown RBP eCLIP11.72□□□□□ -0.53
SHMT2-216ENST00000554975 BPIFB4P59827 614 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 ELAVL2Q12926 359 aaKnown RBP11.72□□□□□ -0.53
SHMT2-216ENST00000554975 STRN3Q13033 797 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 LRRC32Q14392 662 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 ARHGAP44Q17R89 818 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 DCAF4L1Q3SXM0 396 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 ZNF568Q3ZCX4 644 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 GLRA4Q5JXX5 417 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 SEL1L2Q5TEA6 688 aa11.72□□□□□ -0.53
SHMT2-216ENST00000554975 RNF43Q68DV7 783 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms