RNA–Protein interactions for RNA: ENST00000550872.1

CHMP1A-209, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 533 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-209ENST00000550872 TADA2BQ86TJ2 420 aa17.02■□□□□ 0.32
CHMP1A-209ENST00000550872 ERICH1Q86X53 443 aa17.02■□□□□ 0.32
CHMP1A-209ENST00000550872 BPIFB1Q8TDL5 484 aa17.02■□□□□ 0.32
CHMP1A-209ENST00000550872 SH3RF2Q8TEC5 729 aa17.02■□□□□ 0.32
CHMP1A-209ENST00000550872 CLEC4CQ8WTT0 213 aa17.02■□□□□ 0.32
CHMP1A-209ENST00000550872 DEPDC1BQ8WUY9 529 aa17.02■□□□□ 0.32
CHMP1A-209ENST00000550872 CPA5Q8WXQ8 436 aa17.02■□□□□ 0.32
CHMP1A-209ENST00000550872 GOLGA1Q92805 767 aa17.02■□□□□ 0.32
CHMP1A-209ENST00000550872 KHSRPQ92945 711 aaKnown RBP eCLIP17.02■□□□□ 0.32
CHMP1A-209ENST00000550872 LRRC3BQ96PB8 259 aa17.02■□□□□ 0.32
CHMP1A-209ENST00000550872 CDK5RAP1Q96SZ6 601 aaKnown RBP17.02■□□□□ 0.32
CHMP1A-209ENST00000550872 PCDHB18PQ96TA0 734 aa17.02■□□□□ 0.32
CHMP1A-209ENST00000550872 TRMT61BQ9BVS5 477 aaKnown RBP17.02■□□□□ 0.32
CHMP1A-209ENST00000550872 SMOC2Q9H3U7 446 aa17.02■□□□□ 0.32
CHMP1A-209ENST00000550872 SMPD4Q9NXE4 827 aa17.02■□□□□ 0.32
CHMP1A-209ENST00000550872 TJP2Q9UDY2 1190 aa17.02■□□□□ 0.32
CHMP1A-209ENST00000550872 CPQQ9Y646 472 aa17.02■□□□□ 0.32
CHMP1A-209ENST00000550872 NUP210Q8TEM1 1887 aaPredicted RBP17.01■□□□□ 0.31
CHMP1A-209ENST00000550872 DCXO43602 365 aa17.01■□□□□ 0.31
CHMP1A-209ENST00000550872 NARSO43776 548 aaKnown RBP17.01■□□□□ 0.31
CHMP1A-209ENST00000550872 LTFP02788 710 aa17.01■□□□□ 0.31
CHMP1A-209ENST00000550872 CYP1A1P04798 512 aaPredicted RBP17.01■□□□□ 0.31
CHMP1A-209ENST00000550872 ZNF75DP51815 510 aa17.01■□□□□ 0.31
CHMP1A-209ENST00000550872 NOMO3P69849 1222 aa17.01■□□□□ 0.31
CHMP1A-209ENST00000550872 GPC5P78333 572 aa17.01■□□□□ 0.31
CHMP1A-209ENST00000550872 KLHL30Q0D2K2 578 aa17.01■□□□□ 0.31
CHMP1A-209ENST00000550872 TRIM14Q14142 442 aa17.01■□□□□ 0.31
CHMP1A-209ENST00000550872 PTPN20Q4JDL3 420 aa17.01■□□□□ 0.31
CHMP1A-209ENST00000550872 OR6B2Q6IFH4 312 aa17.01■□□□□ 0.31
CHMP1A-209ENST00000550872 HFE2Q6ZVN8 426 aa17.01■□□□□ 0.31
CHMP1A-209ENST00000550872 ZNF276Q8N554 614 aa17.01■□□□□ 0.31
CHMP1A-209ENST00000550872 MSANTD4Q8NCY6 345 aa17.01■□□□□ 0.31
CHMP1A-209ENST00000550872 RNF139Q8WU17 664 aa17.01■□□□□ 0.31
CHMP1A-209ENST00000550872 EDEM1Q92611 657 aa17.01■□□□□ 0.31
CHMP1A-209ENST00000550872 FAM149B1Q96BN6 582 aa17.01■□□□□ 0.31
CHMP1A-209ENST00000550872 HAUS4Q9H6D7 363 aa17.01■□□□□ 0.31
CHMP1A-209ENST00000550872 BRD9Q9H8M2 597 aa17.01■□□□□ 0.31
CHMP1A-209ENST00000550872 ABCC13Q9NSE7 274 aa17.01■□□□□ 0.31
CHMP1A-209ENST00000550872 THG1LQ9NWX6 298 aaKnown RBP17.01■□□□□ 0.31
CHMP1A-209ENST00000550872 DNMT3LQ9UJW3 386 aa17.01■□□□□ 0.31
CHMP1A-209ENST00000550872 HCN4Q9Y3Q4 1203 aa17.01■□□□□ 0.31
CHMP1A-209ENST00000550872 LEFTY2O00292 366 aa17■□□□□ 0.31
CHMP1A-209ENST00000550872 ZNF263O14978 683 aa17■□□□□ 0.31
CHMP1A-209ENST00000550872 MDM4O15151 490 aa17■□□□□ 0.31
CHMP1A-209ENST00000550872 ERBB2P04626 1255 aa17■□□□□ 0.31
CHMP1A-209ENST00000550872 TPM1P09493 284 aa17■□□□□ 0.31
CHMP1A-209ENST00000550872 SRFP11831 508 aa17■□□□□ 0.31
CHMP1A-209ENST00000550872 SKILP12757 684 aa17■□□□□ 0.31
CHMP1A-209ENST00000550872 ALADP13716 330 aa17■□□□□ 0.31
CHMP1A-209ENST00000550872 GDI1P31150 447 aa17■□□□□ 0.31
CHMP1A-209ENST00000550872 PRKCIP41743 596 aa17■□□□□ 0.31
CHMP1A-209ENST00000550872 ZXDAP98168 799 aa17■□□□□ 0.31
CHMP1A-209ENST00000550872 EFEMP1Q12805 493 aa17■□□□□ 0.31
CHMP1A-209ENST00000550872 CC2D1AQ6P1N0 951 aaPredicted RBP17■□□□□ 0.31
CHMP1A-209ENST00000550872 KLHDC10Q6PID8 442 aa17■□□□□ 0.31
CHMP1A-209ENST00000550872 TMC6Q7Z403 805 aa17■□□□□ 0.31
CHMP1A-209ENST00000550872 DDX42Q86XP3 938 aaKnown RBP eCLIP17■□□□□ 0.31
CHMP1A-209ENST00000550872 UBALD2Q8IYN6 164 aa17■□□□□ 0.31
CHMP1A-209ENST00000550872 SYN2Q92777 582 aaPredicted RBP17■□□□□ 0.31
CHMP1A-209ENST00000550872 C18orf8Q96DM3 657 aa17■□□□□ 0.31
CHMP1A-209ENST00000550872 GKN1Q9NS71 199 aa17■□□□□ 0.31
CHMP1A-209ENST00000550872 OLA1Q9NTK5 396 aaKnown RBP17■□□□□ 0.31
CHMP1A-209ENST00000550872 RASAL2Q9UJF2 1139 aa17■□□□□ 0.31
CHMP1A-209ENST00000550872 DUSP12Q9UNI6 340 aa17■□□□□ 0.31
CHMP1A-209ENST00000550872 TCF3P15923 654 aa16.99■□□□□ 0.31
CHMP1A-209ENST00000550872 ZXDBP98169 803 aa16.99■□□□□ 0.31
CHMP1A-209ENST00000550872 FCHO2Q0JRZ9 810 aa16.99■□□□□ 0.31
CHMP1A-209ENST00000550872 USP4Q13107 963 aa16.99■□□□□ 0.31
CHMP1A-209ENST00000550872 ZNF77Q15935 545 aa16.99■□□□□ 0.31
CHMP1A-209ENST00000550872 CLEC16AQ2KHT3 1053 aa16.99■□□□□ 0.31
CHMP1A-209ENST00000550872 ARHGAP29Q52LW3 1261 aa16.99■□□□□ 0.31
CHMP1A-209ENST00000550872 TDRD12Q587J7 1177 aaKnown RBP16.99■□□□□ 0.31
CHMP1A-209ENST00000550872 FAM183BPQ6ZVS7 135 aa16.99■□□□□ 0.31
CHMP1A-209ENST00000550872 ZNF571Q7Z3V5 609 aaPredicted RBP16.99■□□□□ 0.31
CHMP1A-209ENST00000550872 MIB1Q86YT6 1006 aa16.99■□□□□ 0.31
CHMP1A-209ENST00000550872 SLC30A5Q8TAD4 765 aa16.99■□□□□ 0.31
CHMP1A-209ENST00000550872 KLF16Q9BXK1 252 aaPredicted RBP16.99■□□□□ 0.31
CHMP1A-209ENST00000550872 C11orf16Q9NQ32 467 aa16.99■□□□□ 0.31
CHMP1A-209ENST00000550872 CFAP97Q9P2B7 532 aa16.99■□□□□ 0.31
CHMP1A-209ENST00000550872 STRIP2Q9ULQ0 834 aa16.99■□□□□ 0.31
CHMP1A-209ENST00000550872 CAPN9O14815 690 aa16.98■□□□□ 0.31
CHMP1A-209ENST00000550872 CHADO15335 359 aa16.98■□□□□ 0.31
CHMP1A-209ENST00000550872 IRF1P10914 325 aa16.98■□□□□ 0.31
CHMP1A-209ENST00000550872 UNGP13051 313 aaPredicted RBP16.98■□□□□ 0.31
CHMP1A-209ENST00000550872 NSFP46459 744 aaKnown RBP16.98■□□□□ 0.31
CHMP1A-209ENST00000550872 GABRB2P47870 512 aa16.98■□□□□ 0.31
CHMP1A-209ENST00000550872 YWHAZP63104 245 aaKnown RBP16.98■□□□□ 0.31
CHMP1A-209ENST00000550872 SLC6A3Q01959 620 aa16.98■□□□□ 0.31
CHMP1A-209ENST00000550872 MTF1Q14872 753 aa16.98■□□□□ 0.31
CHMP1A-209ENST00000550872 TAF5Q15542 800 aa16.98■□□□□ 0.31
CHMP1A-209ENST00000550872 TSR1Q2NL82 804 aaKnown RBP16.98■□□□□ 0.31
CHMP1A-209ENST00000550872 C2CD6Q53TS8 623 aa16.98■□□□□ 0.31
CHMP1A-209ENST00000550872 EFHC1Q5JVL4 640 aa16.98■□□□□ 0.31
CHMP1A-209ENST00000550872 TOGARAM2Q6ZUX3 1019 aa16.98■□□□□ 0.31
CHMP1A-209ENST00000550872 ZDHHC17Q8IUH5 632 aa16.98■□□□□ 0.31
CHMP1A-209ENST00000550872 RIN3Q8TB24 985 aa16.98■□□□□ 0.31
CHMP1A-209ENST00000550872 EDAQ92838 391 aa16.98■□□□□ 0.31
CHMP1A-209ENST00000550872 IRF7Q92985 503 aa16.98■□□□□ 0.31
CHMP1A-209ENST00000550872 MRFAP1L1Q96HT8 127 aa16.98■□□□□ 0.31
CHMP1A-209ENST00000550872 ZFYVE19Q96K21 471 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms